This tool allows you to view (time-)series data at multiple voxels simultaneously. Groups of voxels can be assigned different colours, and the mean can be taken over the voxels within each group.
A variety of registration methods (some via extra plug-ins) are available for motion correction and other image alignment tasks.
ROI and subregion tools for:
Automatically generating data-driven subregions using supervoxels and K-means clustering.
Manually drawing ROIs on the images.
Calculating quantities and visualizing data within regions/ROIs.
Quantiphyse includes a simple markup language that can be used to automate analysis so that it can be reused on the same or other data, e.g, for batch processing. Markup can be generated from the GUI from an existing analysis.