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Publications from the MultiMeDIA lab | Department of Engineering Science | University of Oxford

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MultiMeDIA Publications

Machine Learning-Driven Rational Design in Nanomedicine: Advances in Computational Drug Delivery and In Silico Screening
Krish W. Ramadurai, Abhirup Banerjee, https://link.springer.com/book/10.1007/978-3-032-04012-1
Books, 2026
Statistical Shape Modelling in Cardiovascular Disease: A Narrative Review
Alexander J. Sharp, Timothy R. Betts, Abhirup Banerjee
Journal of the Royal Society Interface, 2025
Multi-Phase Deep Learning Model for Automated Disease Classification from Cardiac Cine MRI
Nicharee Srikijkasemwat, Mauricio Villarroel, Abhirup Banerjee
Journal of the Royal Society Interface, 2025
3D Cardiac Shape Analysis with Variational Point Cloud Autoencoders for Myocardial Infarction Prediction and Virtual Heart Synthesis
Marcel Beetz, Abhirup Banerjee, Lei Li, Julia Camps, Blanca Rodriguez, Vicente Grau
Computerized Medical Imaging and Graphics, 2025
beta4dist: A Python Package for the Four-Parameter Beta Distribution and Likelihood-Based Estimation
Soham Ghosh, Sujay Mukhoti, Abhirup Banerjee
SoftwareX, 2025
Identifying Extra Pulmonary Vein Targets for Persistent Atrial Fibrillation Ablation: Bridging Advanced and Conventional Mapping Techniques
Alexander J. Sharp, Michael T. Pope, Andre Briosa e Gala, Richard Varini, Abhirup Banerjee, Timothy R. Betts
EP Europace, 2025
New Trends of Adversarial Machine Learning for Data Fusion and Intelligent Systems
Weiping Ding, Zheng Zhang, Luis Martínez, Yu Huang, Zehong (Jimmy) Cao, Jun Liu, Abhirup Banerjee
Information Fusion, 2025
Multi-modal Integration of MRI and Global Chamber Charge Density Mapping for the Evaluation of Atrial Fibrillation
Alexander J. Sharp, Michael T. B. Pope, Andre Briosa e Gala, Richard Varini, Timothy R. Betts, Abhirup Banerjee
Royal Society Open Science, 2025
Editorial: Artificial Intelligence Applications for Cancer Diagnosis in Radiology
Abhirup Banerjee, Hongming Shan, Ruibin Feng
Frontiers in Radiology, 2025
NeCA: 3D Coronary Artery Tree Reconstruction from Two 2D Projections via Neural Implicit Representation
Yiying Wang, Abhirup Banerjee, Vicente Grau
Bioengineering, 2024
Deep Multi-metric Training: The Need of Multi-metric Curve Evaluation to Avoid Weak Learning
Michail Mamalakis, Abhirup Banerjee, Surajit Ray, Craig Wilkie, Richard H. Clayton, Andrew J. Swift, George Panoutsos, Bart Vorselaars
Neural Computing and Applications, 2024
Leveraging 3D Atrial Geometry for the Evaluation of Atrial Fibrillation: A Comprehensive Review
Alexander J. Sharp, Timothy R. Betts, Abhirup Banerjee
Journal of Clinical Medicine, 2024
Patient-Specific In Silico 3D Coronary Model in Cardiac Catheterisation Laboratories
Mojtaba Lashgari, Robin P. Choudhury, Abhirup Banerjee
Frontiers in Cardiovascular Medicine, 2024
Scoring Systems Developed By Machine Learning: Intelligent But Simple To Use?
Abhirup Banerjee, Paul Leeson
European Heart Journal, 2024
Characterization of a Robust Probabilistic Framework for Brain Magnetic Resonance Image Data Distributions
Abhirup Banerjee, Sujay Mukhoti
Stat, 2023
A Completely Automated Pipeline for 3D Reconstruction of Human Heart from 2D Cine MR Slices
Abhirup Banerjee, Julià Camps, Ernesto Zacur, Christopher M. Andrews, Yoram Rudy, Robin P. Choudhury, Blanca Rodriguez, Vicente Grau
Philosophical Transactions of the Royal Society A, 2020
DenResCov-19: A Deep Transfer Learning Network for Robust Automatic Classification of COVID-19, Pneumonia, and Tuberculosis from X-Rays
Michail Mamalakis, Andrew J. Swift, Bart Vorselaars, Surajit Ray, Simonne Weeks, Weiping Ding, Richard H. Clayton, Louise S. Mackenzie, Abhirup Banerjee
Computerized Medical Imaging and Graphics, 2008
A Spatially Constrained Probabilistic Model for Robust Image Segmentation
Abhirup Banerjee, Pradipta Maji
IEEE Transactions on Image Processing, 2001
Use of Machine Learning and Artificial Intelligence to Predict SARS-CoV-2 Infection from Full Blood Counts in a Population
Abhirup Banerjee, Surajit Ray, Bart Vorselaars, Joanne Kitson, Michail Mamalakis, Simonne Weeks, Mark Baker, Louise S. Mackenzie
International Immunopharmacology, 2020
Point-Cloud Method for Automated 3D Coronary Tree Reconstruction from Multiple Non-Simultaneous Angiographic Projections
Abhirup Banerjee, Francesca Galassi, Ernesto Zacur, Giovanni L. De Maria, Robin P. Choudhury, Vicente Grau
IEEE Transactions on Medical Imaging, 2020
Segmentation of Bias Field Induced Brain MR Images Using Rough Sets and Stomped-t Distribution
Abhirup Banerjee, Pradipta Maji
Information Sciences, 2002
Spatially Constrained Student's t-Distribution Based Mixture Model for Robust Image Segmentation
Abhirup Banerjee, Pradipta Maji
Journal of Mathematical Imaging and Vision, 2018
Stomped-t: A Novel Probability Distribution for Rough-Probabilistic Clustering
Abhirup Banerjee, Pradipta Maji
Information Sciences, 2017
Rough-Probabilistic Clustering and Hidden Markov Random Field Model for Segmentation of HEp-2 Cell and Brain MR Images
Abhirup Banerjee, Pradipta Maji
Applied Soft Computing, 2016
Rough Sets and Stomped Normal Distribution for Simultaneous Segmentation and Bias Field Correction in Brain MR Images
Abhirup Banerjee, Pradipta Maji
IEEE Transactions on Image Processing, 2015
Rough Sets for Bias Field Correction in MR Images Using Contraharmonic Mean and Quantitative Index
Abhirup Banerjee, Pradipta Maji
IEEE Transactions on Medical Imaging, 2013
Multi-Class TransCompletion: Geometric Deep Learning for Four-Chamber Cardiac Reconstruction from Cine MRI
Zhengda Ma, Abhirup Banerjee
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Feature Invariance via Interpretable Ablation for Single-Source Domain Generalization in X-Ray Angiography Segmentation
Mohammad Atwany, Mojtaba Lashgari, Abhirup Banerjee
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Geometric Deep Learning Model of Left Atrial Geometry and Conduction Velocity in Atrial Fibrillation
Thalia Seale, Alexander J. Sharp, Abhirup Banerjee
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Statistical Shape and Appearance Model of Left Atrial Geometry and Conduction Velocity in Atrial Fibrillation
Alexander J. Sharp, Timothy R. Betts, Abhirup Banerjee
Proceedings of the 52nd International Computing in Cardiology (CinC) Conference 2025, 2025
Domain-Specific Progressive Channel Dropout: Single-Source Domain Generalization for Vessel Segmentation in X-ray Coronary Angiography
Mohammad Atwany, Mojtaba Lashgari, Robin P. Choudhury, Abhirup Banerjee
Proceedings of the 2025 47th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2025
Evaluating Convolution, Attention, and Mamba Based U-Net Models for Multi-class Bi-Atrial Segmentation from LGE-MRI
Claas Thesing, Alfonso Bueno-Orovio, Abhirup Banerjee
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM 2024), 2024
Single-Source Domain Generalization for Coronary Vessels Segmentation in X-ray Angiography
Mohammad Atwany, Mojtaba Lashgari, Robin P. Choudhury, Vicente Grau, Abhirup Banerjee
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM 2024), 2024
Modelling Multi-phase Cardiac Anatomy with Generative Deep Learning
Thalia E. Seale, Blanca Rodriguez, Vicente Grau, Abhirup Banerjee
Proceedings of the 51st International Computing in Cardiology (CinC) Conference, 2024
Modelling Multi-Phase Cardiac Anatomy Using Point Cloud Variational Autoencoders
Thalia Seale, Marcel Beetz, Blanca Rodriguez, Vicente Grau, Abhirup Banerjee
Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI), 2024
Automated 3D Whole-Heart Mesh Reconstruction From 2D Cine MR Slices Using Statistical Shape Model
Abhirup Banerjee, Ernesto Zacur, Robin P. Choudhury, Vicente Grau
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022
Optimised Misalignment Correction from Cine MR Slices using Statistical Shape Model
Abhirup Banerjee, Ernesto Zacur, Robin P. Choudhury, Vicente Grau
Proceedings of the Annual Conference on Medical Image Understanding and Analysis (MIUA), 2021
Optimized Rigid Motion Correction from Multiple Non-Simultaneous X-Ray Angiographic Projections
Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Proceedings of the International Conference on Pattern Recognition and Machine Intelligence (PReMI), 2019
Automated Motion Correction and 3D Vessel Centerlines Reconstruction from Non-simultaneous Angiographic Projections
Abhirup Banerjee, Rajesh K. Kharbanda, Robin P. Choudhury, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2019
Rough Sets for Finite Mixture Model Based HEp-2 Cell Segmentation
Abhirup Banerjee, Pradipta Maji
Proceedings of the International Conference on Rough Sets and Knowledge Technology (RSKT), 2015
Rough Set Based Homogeneous Unsharp Masking for Bias Field Correction in MRI
Abhirup Banerjee, Pradipta Maji
Proceedings of the International Conference on Image Analysis and Processing (ICIAP), 2013
Contraharmonic Mean Based Bias Field Correction in MR Images
Abhirup Banerjee, Pradipta Maji
Proceedings of the International Conference on Computer Analysis of Images and Patterns (CAIP), 2013
Coronary Arteries Segmentation in Invasive X-ray Angiography: A Comprehensive Review and Benchmarking
Mojtaba Lashgari, Mohammad Atwany, Robin Choudhury, Abhirup Banerjee
ACM Transactions on Computing for Healthcare, 2026
AngioDG: Interpretable Channel-informed Feature-modulated Single-source Domain Generalization for Coronary Vessel Segmentation in X-ray Angiography
Mohammad Atwany, Mojtaba Lashgari, Robin P. Choudhury, Vicente Grau, Abhirup Banerjee
ACM Transactions on Computing for Healthcare, 2026
HeartFormer: Semantic-Aware Dual-Structure Transformers for 3D Four-Chamber Cardiac Point Cloud Reconstruction
Zhengda Ma, Abhirup Banerjee
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
Anatomical Basis of Sex Differences in the Electrocardiogram Identified by Three-dimensional Torso–Heart Imaging Reconstruction Pipeline
Hannah J. Smith, Blanca Rodriguez, Yuling Sang, Marcel Beetz, Robin P. Choudhury, Vicente Grau, Abhirup Banerjee
eLife, 2025
Spatiotemporal Deep Learning for Myocardial Infarction Detection in Cardiac Cine MRI
Olivia Dunn, Mauricio Villarroel, Abhirup Banerjee
Proceedings of 30th Conference on Medical Image Understanding and Analysis (MIUA) 2026, 2026
Multi-Task VQ-VAE-2 for Cardiovascular Risk Prediction from Fundus Images
Aminah Iman Dixon, Abhirup Banerjee
Proceedings of 30th Conference on Medical Image Understanding and Analysis (MIUA) 2026, 2026
Semi-Supervised Graph Neural Networks for Ejection Fraction Prediction from Cardiac Ultrasound
Annika Michael, Paul Leeson, Mauricio Villarroel, Abhirup Banerjee
Proceedings of 30th Conference on Medical Image Understanding and Analysis (MIUA) 2026, 2026
Cross-Architectural Feature Fusion for Coronary Artery Stenosis Detection in X-ray Angiography
Haobo Zhu, Mojtaba Lashgari, Jason Chai, Giovanni Luigi De Maria, Vicente Grau, Abhirup Banerjee
Proceedings of 30th Conference on Medical Image Understanding and Analysis (MIUA) 2026, 2026
TechBio 3.0: Multimodal AI and Generative Chemistry for Closed-Loop Drug Discovery
Krish W. Ramadurai, Abhirup Banerjee
npj Drug Discovery, 2026
Reconstructing Conduction Velocity Maps from Sparse Measurements in Atrial Fibrillation
Alexander James Sharp, Timothy R. Betts, Abhirup Banerjee
Proceedings of the 53rd International Computing in Cardiology (CinC) Conference 2026, 2026
Multi-Modal Supervised Contrastive Learning for Myocardial Infarction Classification
Charlotte Grace Richardson, Thalia Seale, Vicente Grau, Abhirup Banerjee
Proceedings of the 53rd International Computing in Cardiology (CinC) Conference 2026, 2026
Statistical Shape and Motion Model for Myocardial Deformation from Tagged Magnetic Resonance Imaging
Thalia Seale, Vicente Grau, Abhirup Banerjee
Proceedings of the 53rd International Computing in Cardiology (CinC) Conference 2026, 2026
End-to-End ECG Digitisation with Soft Segmentation and BiLSTM Signal Reconstruction
Adrian D. McIntosh, Mojtaba Lashgari, Longa Maimbo, Abhirup Banerjee
Proceedings of the 53rd International Computing in Cardiology (CinC) Conference 2026, 2026
CardioPRNet: A Lightweight Network with Adaptive Grids and Progressive Refinement for 3D Whole-Heart Point Cloud Reconstruction
Zhengda Ma, Abhirup Banerjee
IEEE Transactions on Medical Imaging, 2026
Virtual Cells: Multimodal AI for Predictive and Programmable Biology
Krish W. Ramadurai, Abhirup Banerjee
Trends Open, 2026
Multi-Stage NeRF for Efficient 3D Coronary Artery Reconstruction from Two Narrow-Angle Angiographic Projections
Deyu Meng, Mojtaba Lashgari, Yiying Wang, Abhirup Banerjee
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
Modular Single-Source Domain Generalization for X-ray Angiography Segmentation via Caliber-Guidance and Counterfactuals
Mohammad Atwany, Mojtaba Lashgari, Adrian McIntosh, Abhirup Banerjee
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
Domain Generalization in Medical Image Segmentation: A Methodological Review
Mohammad Atwany, Abhirup Banerjee
WIREs Data Mining and Knowledge Discovery, 2025
3D Cardiac Anatomy Generation Using Mesh Latent Diffusion Models
Jolanta Mozyrska, Marcel Beetz, Luke Melas-Kyriazi, Vicente Grau, Abhirup Banerjee, Alfonso Bueno-Orovio
Computerized Medical Imaging and Graphics, 2025
Impact of adjacent thoracic structures in negative left atrial remodelling in atrial fibrillation
Alexander J. Sharp, Michael T. B. Pope, Andre Briosa e Gala, Richard Varini, Timothy R. Betts, Abhirup Banerjee
European Heart Journal, 2024
MRI versus Ultrasound: Exploring the Influence of Imaging Modality on the Fidelity of Non-Contact Charge Density Mapping
Alexander J. Sharp, Wilson Good, Lea Melki, Mike T. Pope, Rohan Wijesurendra, Andre Briosa e Gala, Timothy R. Betts, Abhirup Banerjee
Heart Rhythm, 2023
Left Atrium Surface Mesh Reconstruction from Cardiac MRI
Alexander J. Sharp, Mike T.B. Pope, Rohan Wijesurendra, Andre Briosa e Gala, Timothy R. Betts, Abhirup Banerjee
EP Europace, 2023
Applications of artificial intelligence and computational approaches to imaging for hypertension identification, phenotyping, and outcome prediction: a systematic review
Mohanad Alkhodari, Prenali D. Sattwika, Hannah R. Cutler, George Milner, Turkay Kart, Leontios J. Hadjileontiadis, Ahsan H. Khandoker, Adam J. Lewandowski
European Heart Journal - Digital Health, 2026
An Automated Computational Pipeline for Generating Large-Scale Cohorts of Patient-Specific Ventricular Models in Electromechanical In Silico Trials
Rubén Doste, Julia Camps, Zhinuo Jenny Wang, Lucas Arantes Berg, Maxx Holmes, Hannah Smith, Marcel Beetz, Lei Li
Computer Methods and Programs in Biomedicine, 2026
Real-time Smartphone Alerts During AF Episodes with Implantable Cardiac Monitors and Wearable Devices: SMART-ALERT Study
Andre Briosa e Gala, Alexander James Sharp, Michael Timothy Brian Pope, Milena Leo, Richard Varini, John Paisey, Nick Curzen, Abhirup Banerjee
Heart Rhythm, 2025
AEM: An Interpretable Multi-task Multi-modal Framework for Cardiac Disease Prediction
Jiachuan Peng, Marcel Beetz, Abhirup Banerjee, Min Chen, Vicente Grau
Medical Image Analysis, 2026
Large Language Model-Informed ECG Dual Attention Network for Heart Failure Risk Prediction
Chen Chen, Lei Li, Marcel Beetz, Abhirup Banerjee, Ramneek Gupta, Vicente Grau
IEEE Transactions on Big Data, 2025
Diagnostic Performance of Single-Lead Electrocardiograms from a Smartwatch and a Smartring for Cardiac Arrhythmia Detection
Andre Briosa e Gala, Alexander James Sharp, David Schramm, Michael Timothy Brian Pope, Milena Leo, Richard Varini, Abhirup Banerjee, Kyaw Zaw Win
Heart Rhythm O2, 2025
Deep Learning-Based Coronary Vessel Segmentation in X-ray Angiography Using Temporal Information
Haorui He, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Medical Image Analysis, 2025
Deep Conditional Generative Model for Personalization of 12-Lead Electrocardiograms and Cardiovascular Risk Prediction
Yuling Sang, Abhirup Banerjee, Marcel Beetz, Vicente Grau
Frontiers in Digital Health, 2025
Personalized topology-informed localization of standard 12-lead ECG electrode placement from incomplete cardiac MRIs for efficient cardiac digital twins
Lei Li, Hannah Smith, Yilin Lyu, Julia Camps, Shuang Qian, Blanca Rodriguez, Abhirup Banerjee, Vicente Grau
Medical Image Analysis, 2025
Splitting and Merging for Active Contours: Plug-and-play
Mojtaba Lashgari, Abhirup Banerjee, Hossein Rabbani
Mathematics, 2025
Modeling the Mechanisms of Non-Neurogenic Dynamic Cerebral Autoregulation
Natali van Zijl, Abhirup Banerjee, Stephen John Payne
IEEE Transactions on Biomedical Engineering, 2025
https://onlinelibrary.wiley.com/doi/10.1002/joa3.13124``Real-World
Andre Briosa e Gala, Michael T. B. Pope, Milena Leo, Alexander J. Sharp, Abhirup Banerjee, Duncan Field, Honey Thomas, Richard Balasubramaniam
Journal of Arrhythmia, 2024
Role of Impedance Drop and Lesion Size Index (LSI) to Guide Catheter Ablation for Atrial Fibrillation
Milena Leo, Abhirup Banerjee, Andre Briosa e Gala, Michael Pope, Michala Pedersen, Kim Rajappan, Matthew Ginks, Yaver Bashir
Pacing and Clinical Electrophysiology, 2024
Hunting Imaging Biomarkers in Pulmonary Fibrosis: Benchmarks of the AIIB23 Challenge
Yang Nan, Xiaodan Xing, Shiyi Wang, Zeyu Tang, Federico N. Felder, Sheng Zhang, Roberta E. Ledda, Xiaoliu Ding
Medical Image Analysis, 2024
Cardiovascular Magnetic Resonance Before Invasive Coronary Angiography in Suspected Non--ST-Segment Elevation Myocardial Infarction
Mayooran Shanmuganathan, Chrysovalantou Nikolaidou, Matthew K. Burrage, Alessandra Borlotti, Rafail Kotronias, Roberto Scarsini, Abhirup Banerjee, Dimitrios Terentes-Printzios
JACC: Cardiovascular Imaging, 2024
Modeling 3D Cardiac Contraction and Relaxation With Point Cloud Deformation Networks
Marcel Beetz, Abhirup Banerjee, Vicente Grau
IEEE Journal of Biomedical and Health Informatics, 2024
Toward Enabling Cardiac Digital Twins of Myocardial Infarction Using Deep Computational Models for Inverse Inference
Lei Li, Julia Camps, Zhinuo (Jenny) Wang, Marcel Beetz, Abhirup Banerjee, Blanca Rodriguez, Vicente Grau
IEEE Transactions on Medical Imaging, 2024
Multi-class Point Cloud Completion Networks for 3D Cardiac Anatomy Reconstruction from Cine Magnetic Resonance Images
Marcel Beetz, Abhirup Banerjee, Julius Ossenberg-Engels, Vicente Grau
Medical Image Analysis, 2023
Calcium Dysregulation Combined With Mitochondrial Failure and Electrophysiological Maturity Converge in Parkinson’s iPSC-Dopamine Neurons
Dayne A. Beccano-Kelly, Marta Cherubini, Yassine Mousba, Kaitlyn M. L. Cramb, Stefania Giussani, Maria Claudia Caiazza, Pavandeep Rai, Siv Vingill
iScience, 2023
Acute Changes in Myocardial Tissue Characteristics During Hospitalization in Patients with COVID-19
Mayooran Shanmuganathan, Rafail A. Kotronias, Matthew K. Burrage, Yujun Ng, Abhirup Banerjee, Cheng Xie, Alison Fletcher, Peter Manley
Frontiers in Cardiovascular Medicine, 2023
Rapid Neutrophil Mobilization by VCAM-1^+ Endothelial Cell-Derived Extracellular Vesicles
Naveed Akbar, Adam T. Braithwaite, Emma M. Corr, Graeme J. Koelwyn, Coen van Solingen, Clément Cochain, Antoine-Emmanuel Saliba, Alastair Corbin
Cardiovascular Research, 2023
Acute Response in the Noninfarcted Myocardium Predicts Long-Term Major Adverse Cardiac Events After STEMI
Mayooran Shanmuganathan, Ambra Masi, Matthew K. Burrage, Rafail A. Kotronias, Alessandra Borlotti, Roberto Scarsini, Abhirup Banerjee, Dimitrios Terentes-Printzios
JACC: Cardiovascular Imaging, 2022
Interpretable Cardiac Anatomy Modeling Using Variational Mesh Autoencoders
Marcel Beetz, Jorge Corral Acero, Abhirup Banerjee, Ingo Eitel, Ernesto Zacur, Torben Lange, Thomas Stiermaier, Ruben Evertz
Frontiers in Cardiovascular Medicine, 2022
A Robust COVID-19 Mortality Prediction Calculator Based on Lymphocyte Count, Urea, C-Reactive Protein, Age and Sex (LUCAS) with Chest X-Rays
Surajit Ray, Abhirup Banerjee, Andrew Swift, Joseph W. Fanstone, Michail Mamalakis, Bart Vorselaars, Craig Wilkie, Joby Cole
Scientific Reports, 2022
Development of a Mortality Prediction Model in Hospitalised SARS-CoV-2 Positive Patients Based on Routine Kidney Biomarkers
Anna N. Boss, Abhirup Banerjee, Michail Mamalakis, Surajit Ray, Andrew J. Swift, Craig Wilkie, Joseph W. Fanstone, Bart Vorselaars
International Journal of Molecular Sciences, 2022
Multi-Domain Variational Autoencoders for Combined Modeling of MRI-Based Biventricular Anatomy and ECG-Based Cardiac Electrophysiology
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Frontiers in Physiology, 2022
INtra-procedural ultraSound Imaging for DEtermination of atrial wall thickness and acute tissue changes after isolation of the pulmonary veins with radiofrequency, cryoballoon or laser balloon energy: the INSIDE PVs Study
Milena Leo, Giovanni L. De Maria, Andre Briosa e Gala, Michael Pope, Abhirup Banerjee, Andrew Kelion, Michala Pedersen, Kim Rajappan
International Journal of Cardiovascular Imaging, 2021
TUNE++: Topology-Guided Uncertainty Estimation for Reliable 3D Medical Image Segmentation
Ashim Dhor, Abhirup Banerjee, Tanmay Basu
Proceedings of the Medical Imaging with Deep Learning (MIDL) 2026, 2026
HISTO-UNet: Histopathology Image Segmentation Using Topology-Aware UNet with Dual Uncertainty Quantification
Ashim Dhor, Emily Das, Rasel Mondal, Shweta Azad, Vaishali Walke, Shakti Kumar Yadav, Abhirup Banerjee, Tanmay Basu
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Deep Learning Optimisation for Sports Cardiology: Neural Architecture Search-Driven Arrhythmia Classification
Erik Vanegas Muller, Arese Joe-Oshodi, Liang He, Abhirup Banerjee, Mauricio Villarroel
Proceedings of the 52nd International Computing in Cardiology (CinC) Conference, 2025
Towards the Validation of a Digital Twin Pipeline on Patients with Bundle Branch Block
João P B Pereira, Lucas A Berg, Julia Camps, Ruben Doste, Thais J Soares, Matheus C Faesy, Tiago D Franco, Fabricio J M Santos
Proceedings of the 52nd International Computing in Cardiology (CinC) Conference, 2025
Comparing Manual and Automated Digital Electrode Placement for 12-Lead ECG Using MRI-Based Torso Models
Matheus C Faesy, Lucas Arantes Berg, Lara S Rocha, Daniel K Almeida, Filipe L Namorato, Daniel M P Leme, Camille S dos Santos, Zhengda Ma
Proceedings of the 52nd International Computing in Cardiology (CinC) Conference, 2025
A Multi-Scale Computational Framework for Human-Based Modelling and Simulation of Adverse Cardiac Remodelling in Type 2 Diabetes
Ambre Bertrand, Lucas Arantes-Berg, Ruben Doste, Jakub Tomek, Albert Dasi, Abhirup Banerjee, Julia Camps, Vicente Grau
Proceedings of the 52nd International Computing in Cardiology (CinC) Conference, 2025
An Anatomical Significance-Aware Architecture for Explainable Myocardial Infarction Prediction via Multi-task Learning
Jiachuan Peng, Marcel Beetz, Abhirup Banerjee, Min Chen, Vicente Grau
Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI 2025), 2025
DeepCA: Deep Learning-Based 3D Coronary Artery Tree Reconstruction from Two 2D Non-Simultaneous X-Ray Angiography Projections
Yiying Wang, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Proceedings of the 2025 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2025
Self-supervised Instance Segmentation of Diabetic Foot Ulcers via Feature Correspondence Distillation
Wenhui Zhang, Abhirup Banerjee, Surajit Ray
Proceedings of the Diabetic Foot Ulcers Grand Challenge (DFUC 2024), 2024
Deep Learning-based Modelling of Complex Hypertensive Multi-Organ Damage with Uncertainty Quantification from Simple Clinical Measures
Turkay Kart, Mohanad Alkhodari, Winok Lapidaire, Abhirup Banerjee, Adam J. Lewandowski, Paul Leeson
Proceedings of the 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024
TCPNet: A Novel Tumor Contour Prediction Network Using MRIs
Shraddha Agarwal, Vinod Kumar Kurmi, Abhirup Banerjee, Tanmay Basu
Proceedings of the IEEE 12th International Conference on Healthcare Informatics (ICHI), 2024
Uncertainty Quantification in Deep Learning Framework for Mallampati Classification
Anuradha Mahato, Prateek Sarangi, Vinod Kumar Kurmi, Abhirup Banerjee, Abhishek Goyal, Tanmay Basu
Proceedings of the IEEE 12th International Conference on Healthcare Informatics (ICHI), 2024
Feasibility and Benefits of Joint Learning from MRI Databases with Different Brain Diseases and Modalities for Segmentation
Wentian Xu, Matthew Moffat, Thalia Seale, Ziyun Liang, Felix Wagner, Daniel Whitehouse, David Menon, Virginia Newcombe
Proceedings of Medical Imaging with Deep Learning (MIDL), 2024
HyperScore: A Unified Measure to Model Hypertension Progression Using Multi-modality Measurements and Semi-supervised Learning
Mohanad Alkhodari, Winok Lapidaire, Zhaohan Xiong, Turkay Kart, Yasser Iturria-Medina, Leontios Hadjileontiadis, Ahsan Khandoker, Adam Lewandowski
Proceedings of the 17th IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2023
Automated Coronary Vessels Segmentation in X-ray Angiography Using Graph Attention Network
Haorui He, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Generating Virtual Populations of 3D Cardiac Anatomies with Snowflake-Net
Jiachuan Peng, Marcel Beetz, Abhirup Banerjee, Min Chen, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Multi-objective Point Cloud Autoencoders for Explainable Myocardial Infarction Prediction
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Proceedings of Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023
3D Shape-Based Myocardial Infarction Prediction Using Point Cloud Classification Networks
Marcel Beetz, Yilong Yang, Abhirup Banerjee, Lei Li, Vicente Grau
Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2023
Influence of Myocardial Infarction on QRS Properties: A Simulation Study
Lei Li, Julia Camps, Zhinuo Wang, Abhirup Banerjee, Blanca Rodriguez, Vicente Grau
Proceedings of the 12th International Conference on Functional Imaging and Modeling of the Heart (FIMH), 2023
Mesh U-Nets for 3D Cardiac Deformation Modeling
Marcel Beetz, Jorge Corral Acero, Abhirup Banerjee, Ingo Eitel, Ernesto Zacur, Torben Lange, Thomas Stiermaier, Ruben Evertz
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Point2Mesh-Net: Combining Point Cloud and Mesh-Based Deep Learning for Cardiac Shape Reconstruction
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Post-Infarction Risk Prediction with Mesh Classification Networks
Marcel Beetz, Jorge Corral Acero, Abhirup Banerjee, Ingo Eitel, Ernesto Zacur, Torben Lange, Thomas Stiermaier, Ruben Evertz
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Deep Computational Model for the Inference of Ventricular Activation Properties
Lei Li, Julia Camps, Abhirup Banerjee, Marcel Beetz, Blanca Rodriguez, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2023
Reconstructing 3D Cardiac Anatomies from Misaligned Multi-View Magnetic Resonance Images with Mesh Deformation U-Nets
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Proceedings of the International Workshop on Geometric Deep Learning in Medical Image Analysis (GeoMedIA), 2022
Automated Torso Contour Extraction from Clinical Cardiac MR Slices for 3D Torso Reconstruction
Hannah J. Smith, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022
Semi-Supervised Coronary Vessels Segmentation from Invasive Coronary Angiography with Connectivity-Preserving Loss Function
Haorui He, Abhirup Banerjee, Marcel Beetz, Robin P. Choudhury, Vicente Grau
Proceedings of the IEEE 19th International Symposium on Biomedical Imaging (ISBI), 2022
Combined Generation of Electrocardiogram and Cardiac Anatomy Models Using Multi-Modal Variational Autoencoders
Marcel Beetz, Abhirup Banerjee, Yuling Sang, Vicente Grau
Proceedings of the IEEE 19th International Symposium on Biomedical Imaging (ISBI), 2022
Generating Subpopulation-Specific Biventricular Anatomy Models Using Conditional Point Cloud Variational Autoencoders
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2022
Predicting 3D Cardiac Deformations With Point Cloud Autoencoders
Marcel Beetz, Julius Ossenberg-Engels, Abhirup Banerjee, Vicente Grau
Proceedings of Statistical Atlases and Computational Models of the Heart (STACOM), 2022
Biventricular Surface Reconstruction From Cine MRI Contours Using Point Completion Networks
Marcel Beetz, Abhirup Banerjee, Vicente Grau
Proceedings of the IEEE 18th International Symposium on Biomedical Imaging (ISBI), 2021
Modelling Amyloid Beta Plaque Formation in Alzheimer's Disease
Abhirup Banerjee, Yeung-Yeung Leung, Aaron Wagen, Bertrand Nortier, David Jarrett, Hamza Alawiye, Kevin Wang, Kulsoom Abdullah
The Alan Turing Institute, 2022
Decoupling Wavelet Sub-bands for Single Source Domain Generalization in Fundus Image Segmentation
Shramana Dey, Varun Ajith, Abhirup Banerjee, Sushmita Mitra
IEEE Journal of Biomedical and Health Informatics, 2026
From 2D to 3D, Deep Learning-based Shape Reconstruction in Magnetic Resonance Imaging: A Review
Emma McMillian, Abhirup Banerjee, Alfonso Bueno-Orovio
Computer Methods and Programs in Biomedicine, 2026
Integrated Cardiac and Circulating N-glycan Signatures Reflect Atrial Remodeling in Patients with Atrial Fibrillation
Chi Him Kendrick Yiu, Jack Cheeseman, Georgia Elgood-Hunt, Chenhan Sam Ma, Abhirup Banerjee, Lucia M. Moreira, Aaron M. Johnston, Neelam Mehta
Circulation: Arrhythmia and Electrophysiology, 2026
Female anatomies disguise ECG abnormalities following myocardial infarction: an AI-enabled modelling and simulation study
Hannah J. Smith, Abhirup Banerjee, Leto Luana Riebel, Ruben Doste, Maxx Holmes, Vicente Grau, Blanca Rodriguez
The Journal of Physiology, 2025
An interpretable and explainable neural network to classify sports-related cardiac arrhythmias in professional football athletes
Erik Vanegas Müller, Mirae Harford, Liang He, Abhirup Banerjee, Paul Leeson, Mauricio Villarroel
npj Digital Medicine, 2026
Snowflake Point Transformer with Point Fusion Adversarial Loss for 3D Coronary Artery Tree Reconstruction from Two Non-simultaneous Angiographic Projections
Yiying Wang, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
Computerized Medical Imaging and Graphics, 2026
A Novel Regularized Fuzzy C-Means Clustering Technique for Brain Magnetic Resonance Image Segmentation
Rasel Mondal, Abhirup Banerjee, Tanmay Basu
Engineering Applications of Artificial Intelligence, 2026
Deep Iterative Motion Compensation for 3D Coronary Artery Tree Reconstruction from Two 2D Non-simultaneous Projections
Yiying Wang, Abhirup Banerjee, Robin P. Choudhury, Vicente Grau
IEEE Transactions on Medical Imaging, 2026
Weakly Supervised Patch Annotation for Improved Screening of Diabetic Retinopathy
Shramana Dey, Abhirup Banerjee, B. Uma Shankar, Ramachandran Rajalakshmi, Sushmita Mitra
Engineering Applications of Artificial Intelligence, 2026
Joint 3D Modeling of Cardiac Motion and Surface for Holistic Heart Representation Learning
Jiachuan Peng, Jierui Qu, Jianing Qiu, Marcel Beetz, Abhirup Banerjee, Min Chen, Vicente Grau
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
Graph-based Vision Language Model for Head and Neck Multi-Organ Segmentation
Prateek Sarangi, Abhirup Banerjee, Tanmay Basu
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
CONSULT: Consensus through Multi-Agent Discussion for Whole Slide Image Classification
Ashim Dhor, Abhirup Banerjee, Emily Das, Vinod Kumar Kurmi, Akshay Agarwal, Sweta Azad, Shakti Kumar Yadav, Tanmay Basu
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
MEDHA: Multi-agent Deliberative Histopathology Analysis
Ashim Dhor, Abhirup Banerjee, Tanmay Basu
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
SURE-Net: Stage-wise Uncertainty-guided Network for Stroke Lesion Segmentation
Rasel Mondal, Ashim Dhor, Abhirup Banerjee, Swati Goyal, Tanmay Basu
Proceedings of the 29th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2026), 2026
A Systematic Review of Explainable Artificial Intelligence and Cardiac Electrophysiological Models Addressing Sports-Related Sudden Cardiac Death and Arrest in Adolescents and Young Adults
Erik Vanegas Müller, Nicharee Srikijkasemwat, Andrew Gan, Betty Raman, Mirae Harford, Liang He, Abhirup Banerjee, Katja Gehmlich
npj Digital Medicine, 2026
Contrastive machine learning to quantify hypertensive multi-organ damage and identify new disease phenotypes: a multinational multi-modal study
Mohanad Alkhodari, Winok Lapidaire, Turkay Kart, Zhaohan Xiong, Samuel Krasner, Andrew Fletcher, Natalie Savage, Katie Suriano
Circulation, 2025
A-GODs: Anatomically-Guided Learning for Robust Single-Source Domain-Generalized Optic Disc Segmentation
Shramana Dey, Abhirup Banerjee, Sushmita Mitra
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Deep Convolutional Neural Network for Improved Cardiac Magnetic Resonance Segmentation of Hypertrophic Cardiomyopathy
Emma McMillian, Abhirup Banerjee, Alfonso Bueno-Orovio
Proceedings of the 2026 IEEE 23rd International Symposium on Biomedical Imaging (ISBI), 2026
Weighted Residuals in Epistemic Uncertainty for Medical Image Classification
Prateek Sarangi, Abhirup Banerjee, Vinod Kumar Kurmi, Tanmay Basu
IEEE Journal of Biomedical and Health Informatics, 2025
Representation Learning for Cardiovascular Risk Factors Toward the Healthcare Digital Twin
Yeong Chan Lee, Hyeonbin Jo, Yoon Ho Choi, Seoyun Hong, Injeong Shim, Beomsu Kim, Chamlee Cho, Soyeon Kim
Nature Cardiovascular Research, 2025
Hierarchical Bayesian Modelling for Tumour Segmentation and Uncertainty Quantification in DCE-MRI
Yalei Yang, Abhirup Banerjee, Surajit Ray
Journal of Computational and Graphical Statistics, 2025
SMART-ALERT study: continuous cardiac monitoring and real-time automated smartphone alerts for atrial fibrillation episodes
A. Briosa E Gala, M. T. P. Pope, M. Leo, A. Sharp, R. Varini, J. Paisey, N. Curzen, A. Banerjee
EP Europace, 2025
Comprehensive cardiac interval analysis in the WEAR-TECH study cohort by comparing the Apple Watch Series 6 against a simultaneous 12-lead ECG
David Schramm, Richard Varini, Andre Briosa e Gala, Abhirup Banerjee, Timothy Betts
European Heart Journal, 2024
Conduction velocity-based functional substrate mapping during atrial fibrillation (AF) enhances identification of AF drivers compared to mapping during sinus rhythm
Alexander J. Sharp, Mike T. B. Pope, Andre Briosa e Gala, Richard Vanini, Abhirup Banerjee, Timothy R. Betts
EP Europace, 2024
Automated continuous rhythm monitoring with implantable cardiac monitor and real-time smartphone alerts during af episodes: SMART-ALERT study
A. Briosa e Gala, M. T. B. Pope, M. Leo, A. J. Sharp, R. Varini, J. R. Paisey, N. Curzen, A. Banerjee
EP Europace, 2024
Superiority of Functional vs Structural Atrial Substrate Mapping for Identification of Non-Pulmonary Vein Drivers in Atrial Fibrillation
Alexander J. Sharp, Michael T. Pope, Andre Briosa e Gala, Richard Varini, Abhirup Banerjee, Timothy R. Betts
Heart Rhythm, 2024
Cardiovascular Magnetic Resonance Imaging Before Invasive Coronary Angiography in Suspected Non-st-segment Elevation Myocardial Infarction Can Change Management in over One-third of the Patients
Mayooran Shanmuganathan, Chrysovalantou Nikolaidou, Matthew Burrage, Alessandra Borlotti, Rafail Kotronias, Jeremy Langrish, Andrew Lucking, Alex Pitcher
Journal of Cardiovascular Magnetic Resonance, 2024
Automated CMR Index of Left Ventricular Diastolic Function Post-acute Myocardial Infarction Provides Independent and Incremental Prediction of Long-term Prognosis When Added to Conventional Indices
Mayooran Shanmuganathan, Ricardo Gonzales, Matthew Burrage, Per Arvidsson, Abhirup Banerjee, Irem Cakir, Felicia Seemann, Einar Heiberg
Journal of Cardio- vascular Magnetic Resonance, 2024
Long-term prognosis after acute ST-segment elevation myocardial infarction is determined by characteristics in both non-infarcted and infarcted myocardium on cardiovascular magnetic resonance imaging
M. Shanmuganathan, A. Masi, M. K. Burrage, R. A. Kotronias, A. Borlotti, R. Scarsini, A. Banerjee, D. Terentes-Printzios
Heart, 2021
Insights into Electrophysiological Mechanisms of Atrial Fibrillation Propagation using Simultaneous Bi-Atrial Mapping
M. Pope, P. Kuklik, A. Banerjee, A. B. e Gala, M. Leo, M. Mahmoudi, J. Paisey, and T. R. Betts
EP Europace, 2021
Impaired Myocardial Healing in Patients with Diabetes After ST-Elevation Myocardial Infarction
M. Wamil, A. Borlotti, A. Banerjee, L. Gaughran, G. L. De Maria, A. P. Banning, R. Kharbanda, R. P. Choudhury
European Heart Journal, 2019
Endothelial Cell Derived Extracellular Vesicles Mediate Immune Cell Deployment from the Spleen and Transcriptional Programming Following Acute Myocardial Infarction
N. Akbar, A. Corbin, E. Hogg, A. Banerjee, C. Lee, G. Melling, L. Edgar, R. Dragovic
European Heart Journal, 2019
Endothelial Cell Derived Extracellular Vesicles Mediate Neutrophil Deployment from the Spleen Following Acute Myocardial Infarction
N. Akbar, A. Corbin, S. Dawkins, C. Lee, E. Hogg, L. Edgar, M. Gunadasa-Rohling, A. Banerjee
Heart, 2019