Publications

BibTeX

@article{patientspecific-2024/7,
  title={Patient-specific in silico 3D coronary model in cardiac catheterisation laboratories},
  author={Lashgari M, Choudhury RP & Banerjee A},
  journal={Frontiers in Cardiovascular Medicine},
  volume={11},
  number={1398290},
  publisher={Frontiers Media},
  year = "2024"
}

BibTeX

@article{cardiovascularm-2024/6,
  title={Cardiovascular Magnetic Resonance Before Invasive Coronary Angiography in Suspected Non-ST-Segment Elevation Myocardial Infarction.},
  author={Shanmuganathan M, Nikolaidou C, Burrage MK, Borlotti A, Kotronias R et al.},
  journal={JACC. Cardiovascular imaging},
  pages={S1936-878X(24)00196-7},
  year = "2024"
}

BibTeX

@article{huntingimagingb-2024/6,
  title={Hunting imaging biomarkers in pulmonary fibrosis: Benchmarks of the AIIB23 challenge.},
  author={Nan Y, Xing X, ShiyiWang , Tang Z, Felder FN et al.},
  journal={Medical image analysis},
  volume={97},
  pages={103253},
  year = "2024"
}

BibTeX

@article{conductionveloc-2024/5,
  title={Conduction velocity-based functional substrate mapping during atrial fibrillation (AF) enhances identification of AF drivers compared to mapping during sinus rhythm},
  author={Sharp AJ, Pope MTB, Gala A, Varini R, Banerjee A et al.},
  journal={EP Europace},
  volume={26},
  pages={euae102.135},
  publisher={Oxford University Press (OUP)},
  year = "2024"
}

BibTeX

@article{automatedcontin-2024/5,
  title={Automated continuous rhythm monitoring with implantable cardiac monitor and real-time smartphone alerts during af episodes: SMART-ALERT study},
  author={Gala ABE, Pope M, Leo M, Sharp A, Varini R et al.},
  journal={EP Europace},
  volume={26},
  pages={euae102.230},
  publisher={Oxford University Press (OUP)},
  year = "2024"
}

BibTeX

@article{modelingdcardia-2024/4,
  title={Modeling 3D Cardiac Contraction and Relaxation With Point Cloud Deformation Networks.},
  author={Beetz M, Banerjee A & Grau V},
  journal={IEEE journal of biomedical and health informatics},
  volume={PP},
  year = "2024"
}

BibTeX

@inproceedings{automatedcmrind-2024/4,
  title={Automated CMR index of left ventricular diastolic function post-acute myocardial infarction provides independent and incremental prediction of long-term prognosis when added to conventional indices},
  author={Shanmuganathan M, Gonzales Vera RA, Burrage M, Arvidsson P, Banerjee A et al.},
  booktitle={CMR 2024 – The Global CMR Conference},
  year = "2024"
}

BibTeX

@article{scoringsystemsd-2024/2,
  title={Scoring systems developed by machine learning: intelligent but simple to use?},
  author={Banerjee A & Leeson P},
  journal={European Heart Journal},
  volume={45},
  pages={937-939},
  publisher={Oxford University Press},
  year = "2024"
}

BibTeX

@article{towardsenabling-2024/2,
  title={Towards enabling cardiac digital twins of myocardial infarction using deep computational models for inverse inference},
  author={Li L, Camps J, Wang Z, Beetz M, Banerjee A et al.},
  journal={IEEE Transactions on Medical Imaging},
  publisher={IEEE},
  year = "2024"
}

BibTeX

@misc{automatedcorona-2024/,
  title={Automated Coronary Vessels Segmentation in X-ray Angiography Using Graph Attention Network},
  author={He H, Banerjee A, Choudhury RP & Grau V},
  year = "2024"
}

BibTeX

@misc{generatingvirtu-2024/,
  title={Generating Virtual Populations of 3D Cardiac Anatomies with Snowflake-Net},
  author={Peng J, Beetz M, Banerjee A, Chen M & Grau V},
  year = "2024"
}

BibTeX

@inproceedings{dshapebasedmyoc-2023/12,
  title={3D shape-based myocardial infarction prediction using point cloud classification networks},
  author={Beetz M, Yang Y, Banerjee A, Li L & Grau V},
  booktitle={45th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2023)},
  year = "2023"
}

BibTeX

@article{multiclasspoint-2023/12,
  title={Multi-class point cloud completion networks for 3D cardiac anatomy reconstruction from cine magnetic resonance images.},
  author={Beetz M, Banerjee A, Ossenberg-Engels J & Grau V},
  journal={Medical image analysis},
  volume={90},
  pages={102975},
  year = "2023"
}

@misc{anatomicalbasis-2023/12,
  title={Anatomical basis of human sex differences in ECG identified by automated
  torso-cardiac three-dimensional reconstruction},
  author={Smith HJ, Rodriguez B, Sang Y, Beetz M, Choudhury R et al.},
  year = "2023"
}

BibTeX

@inproceedings{hyperscoreaunif-2023/12,
  title={HyperScore: A unified measure to model hypertension progression using multi-modality measurements and semi-supervised learning},
  author={Alkhodari M, Lapidaire W, Xiong Z, Kart T, Iturria-Medina Y et al.},
  booktitle={2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  pages={1886-1889},
  year = "2023"
}

BibTeX

@article{multiclasspoint-2023/9,
  title={Multi-class point cloud completion networks for 3D cardiac anatomy reconstruction from cine magnetic resonance images},
  author={Beetz M, Banerjee A, Ossenberg-Engels J & Grau V},
  journal={Medical Image Analysis},
  volume={90},
  number={102975},
  publisher={Elsevier},
  year = "2023"
}

@misc{dshapebasedmyoc-2023/7,
  title={3D Shape-Based Myocardial Infarction Prediction Using Point Cloud
  Classification Networks},
  author={Beetz M, Yang Y, Banerjee A, Li L & Grau V},
  year = "2023"
}

@misc{multiobjectivep-2023/7,
  title={Multi-objective point cloud autoencoders for explainable myocardial
  infarction prediction},
  author={Beetz M, Banerjee A & Grau V},
  year = "2023"
}

@misc{modelingdcardia-2023/7,
  title={Modeling 3D cardiac contraction and relaxation with point cloud
  deformation networks},
  author={Beetz M, Banerjee A & Grau V},
  year = "2023"
}

BibTeX

@misc{multiclasspoint-2023/7,
  title={Multi-class point cloud completion networks for 3D cardiac anatomy reconstruction from cine magnetic resonance images},
  author={Beetz M, Banerjee A, Ossenberg-Engels J & Grau V},
  year = "2023"
}

BibTeX

@article{calciumdysregul-2023/7,
  title={Calcium dysregulation combined with mitochondrial failure and electrophysiological maturity converge in Parkinson's iPSC-dopamine neurons.},
  author={Beccano-Kelly DA, Cherubini M, Mousba Y, Cramb KML, Giussani S et al.},
  journal={iScience},
  volume={26},
  pages={107044},
  year = "2023"
}

@misc{multiobjectivep-2023/7,
  title={Multi-objective point cloud autoencoders for explainable myocardial
  infarction prediction},
  author={Beetz M, Banerjee A & Grau V},
  year = "2023"
}

@misc{modelingdcardia-2023/7,
  title={Modeling 3D cardiac contraction and relaxation with point cloud
  deformation networks},
  author={Beetz M, Banerjee A & Grau V},
  year = "2023"
}

@misc{multiclasspoint-2023/7,
  title={Multi-class point cloud completion networks for 3D cardiac anatomy
  reconstruction from cine magnetic resonance images},
  author={Beetz M, Banerjee A, Ossenberg-Engels J & Grau V},
  year = "2023"
}

@misc{dshapebasedmyoc-2023/7,
  title={3D Shape-Based Myocardial Infarction Prediction Using Point Cloud
  Classification Networks},
  author={Beetz M, Yang Y, Banerjee A, Li L & Grau V},
  year = "2023"
}

BibTeX

@inproceedings{influenceofmyoc-2023/6,
  title={Influence of myocardial infarction on QRS properties: a simulation study},
  author={Li L, Camps J, Wang Z, Banerjee A, Rodriguez B et al.},
  booktitle={The 12th International Conference On Functional Imaging And Modeling Of The Heart (FIMH2023)},
  pages={223-232},
  year = "2023"
}

BibTeX

@article{calciumdysregul-2023/6,
  title={Calcium dysregulation combined with mitochondrial failure and electrophysiological maturity converge in Parkinson’s iPSC-dopamine neurons},
  author={Beccano-Kelly DA, Cherubini M, Mousba Y, Cramb KML, Giussani S et al.},
  journal={iScience},
  volume={26},
  number={107044},
  publisher={Cell Press},
  year = "2023"
}

BibTeX

@article{acutechangesinm-2023/2,
  title={Acute changes in myocardial tissue characteristics during hospitalization in patients with COVID-19},
  author={Shanmuganathan M, Kotronias RA, Burrage MK, Ng Y, Banerjee A et al.},
  journal={Frontiers in Cardiovascular Medicine},
  volume={10},
  number={1097974},
  publisher={Frontiers Media},
  year = "2023"
}

BibTeX

@article{characterizatio-2023/1,
  title={Characterization of A Robust Probabilistic Framework for Brain MR Image Data Distributions},
  author={Banerjee A & Mukhoti SK},
  journal={Stat},
  publisher={Wiley},
  year = "2023"
}

BibTeX

@inproceedings{influenceofmyoc-2023/1,
  title={Influence of Myocardial Infarction on QRS Properties: A Simulation Study},
  author={Li L, Camps J, Wang Z, Banerjee A, Rodriguez B et al.},
  pages={223-232},
  year = "2023"
}

BibTeX

@inproceedings{multiobjectivep-2023/1,
  title={Multi-objective Point Cloud Autoencoders for Explainable Myocardial Infarction Prediction},
  author={Beetz M, Banerjee A & Grau V},
  pages={532-542},
  year = "2023"
}

BibTeX

@article{characterizatio-2023/,
  title={Characterization of a robust probabilistic framework for brain magnetic resonance image data distributions},
  author={Banerjee A & Mukhoti S},
  journal={STAT},
  volume={12},
  number={ARTN e541},
  year = "2023"
}

BibTeX

@inproceedings{multiobjectivep-2023/,
  title={Multi-objective Point Cloud Autoencoders for Explainable Myocardial Infarction Prediction},
  author={Beetz M, Banerjee A & Grau V},
  pages={532-542},
  year = "2023"
}

BibTeX

@article{acuteresponsein-2022/12,
  title={Acute response in the noninfarcted myocardium predicts long-term major adverse cardiac events after STEMI},
  author={Shanmuganathan M, Masi A, Burrage MK, Kotronias RA, Borlotti A et al.},
  journal={JACC: Cardiovascular Imaging},
  volume={16},
  pages={46-59},
  publisher={Elsevier},
  year = "2022"
}

BibTeX

@article{interpretableca-2022/12,
  title={Interpretable cardiac anatomy modeling using variational mesh autoencoders},
  author={Beetz M, Corral Acero J, Banerjee A, Eitel I, Zacur E et al.},
  journal={Frontiers in Cardiovascular Medicine},
  volume={9},
  number={983868},
  publisher={Frontiers Media},
  year = "2022"
}

@inproceedings{reconstructingd-2022/11,
  title={Reconstructing 3D cardiac anatomies from misaligned multi-view magnetic resonance images with Mesh Deformation U-Nets},
  author={Beetz M, Banerjee A & Grau V},
  booktitle={Geometric Deep Learning in Medical Image Analysis (GeoMedIA Workshop) 2022},
  pages={3-14},
  year = "2022"
}

BibTeX

@article{arobustcovidmor-2022/10,
  title={A robust COVID-19 mortality prediction calculator based on Lymphocyte count, Urea, C-Reactive Protein, Age and Sex (LUCAS) with chest X-rays
},
  author={Ray S, Banerjee A, Swift A, Fanstone JW, Mamalakis M et al.},
  journal={Scientific Reports},
  volume={12},
  number={18220},
  publisher={Springer Nature},
  year = "2022"
}

BibTeX

@inproceedings{automatedtorsoc-2022/9,
  title={Automated Torso Contour Extraction from Clinical Cardiac MR Slices for 3D Torso Reconstruction.},
  author={Smith HJ, Banerjee A, Choudhury RP & Grau V},
  booktitle={44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)},
  pages={3809-3813},
  year = "2022"
}

BibTeX

@inproceedings{automateddwhole-2022/9,
  title={Automated 3D whole-heart mesh reconstruction from 2D cine MR slices using statistical shape model},
  author={Banerjee A, Zacur E, Choudhury RP & Grau V},
  booktitle={44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC 2022)},
  pages={1702-1706},
  year = "2022"
}

BibTeX

@article{developmentofam-2022/6,
  title={Development of a Mortality Prediction Model in Hospitalised SARS-CoV-2 Positive Patients Based on Routine Kidney Biomarkers.},
  author={Boss AN, Banerjee A, Mamalakis M, Ray S, Swift AJ et al.},
  journal={International journal of molecular sciences},
  volume={23},
  pages={7260-7260},
  year = "2022"
}

BibTeX

@article{multidomainvari-2022/6,
  title={Multi-domain variational autoencoders for combined modeling of MRI-based biventricular anatomy and ECG-based cardiac electrophysiology},
  author={Beetz M, Banerjee A & Grau V},
  journal={Frontiers in Physiology},
  volume={13},
  number={886723},
  publisher={Frontiers Media},
  year = "2022"
}

BibTeX

@inproceedings{semisupervisedc-2022/4,
  title={Semi-supervised coronary vessels segmentation from invasive coronary angiography with connectivity-preserving loss function},
  author={He H, Banerjee A, Beetz M, Choudhury RP, Grau V et al.},
  booktitle={IEEE 19th International Symposium on Biomedical Imaging (ISBI 2022)},
  year = "2022"
}

BibTeX

@inproceedings{combinedgenerat-2022/4,
  title={Combined generation of electrocardiogram and cardiac anatomy models using multi-modal variational autoencoders},
  author={Beetz M, Banerjee A, Sang Y & Grau V},
  booktitle={2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI)},
  pages={1-4},
  year = "2022"
}

BibTeX

@misc{lesionsizeindex-2022/3,
  title={Lesion Size Index (LSI)–guided catheter ablation for atrial fibrillation: can tissue impedance drop help to identify desirable ablation settings and target indices?},
  author={Leo M, Banerjee A, Gala AB, Pope M, Pedersen M et al.},
  year = "2022"
}

BibTeX

@article{rapidneutrophil-2022/2,
  title={Rapid neutrophil mobilization by VCAM-1+ endothelial cell-derived extracellular vesicles},
  author={Akbar N, Braithwaite AT, Corr EM, Koelwyn GJ, van Solingen C et al.},
  journal={Cardiovascular Research},
  volume={119},
  pages={236-251},
  publisher={Oxford University Press},
  year = "2022"
}

BibTeX

@misc{predictingdcard-2022/1,
  title={Predicting 3D cardiac deformations with point cloud autoencoders},
  author={Beetz M, Ossenberg-Engels J, Banerjee A & Grau V},
  year = "2022"
}

BibTeX

@misc{generatingsubpo-2022/1,
  title={Generating subpopulation-specific biventricular anatomy models using conditional point cloud variational autoencoders},
  author={Beetz M, Banerjee A & Grau V},
  year = "2022"
}

@inproceedings{reconstructingd-2022/1,
  title={Reconstructing 3D Cardiac Anatomies from Misaligned Multi-View Magnetic Resonance Images with Mesh Deformation U-Nets},
  author={Beetz M, Banerjee A & Grau V},
  pages={3-14},
  year = "2022"
}

@inproceedings{reconstructingd-2022/1,
  title={Reconstructing 3D Cardiac Anatomies from Misaligned Multi-View Magnetic Resonance Images with Mesh Deformation U-Nets},
  author={Beetz M, Banerjee A & Grau V},
  pages={3-14},
  year = "2022"
}

BibTeX

@misc{postinfarctionr-2022/,
  title={Post-Infarction Risk Prediction with Mesh Classification Networks},
  author={Beetz M, Acero JC, Banerjee A, Eitel I, Zacur E et al.},
  year = "2022"
}