Publications from the Systems Engineering group, Department of Engineering Science, University of Oxford
Systems Engineering
Selected Publications
Most Recent Publications
Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production.
Qiu S, Yang A, Yang X, Ni H, Li W et al. (2025), Metabolic engineering, 91, 254-266
BibTeX
@article{proteometradeof-2025/5,
title={Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production.},
author={Qiu S, Yang A, Yang X, Ni H, Li W et al.},
journal={Metabolic engineering},
volume={91},
pages={254-266},
year = "2025"
}
Modeling and Feasibility Assessment of Mineral Carbonation Based on Biological pH Swing for Atmospheric CO 2 Removal
Zhang Y, Long S, Duret MT, Bullock LA, Lam P et al. (2025), ACS Sustainable Chemistry and Engineering, 13(19), 6972-6981
BibTeX
@article{modelingandfeas-2025/5,
title={Modeling and Feasibility Assessment of Mineral Carbonation Based on Biological pH Swing for Atmospheric CO 2 Removal},
author={Zhang Y, Long S, Duret MT, Bullock LA, Lam P et al.},
journal={ACS Sustainable Chemistry and Engineering},
volume={13},
pages={6972-6981},
publisher={American Chemical Society},
year = "2025"
}
Optimal phasing of tidal stream power around the British Isles and within the English Channel for green ammonia production
Driscoll H, Salmon N & Bañares-Alcántara R (2025), Renewable Energy, 241, 122335-122335
BibTeX
@article{optimalphasingo-2025/3,
title={Optimal phasing of tidal stream power around the British Isles and within the English Channel for green ammonia production},
author={Driscoll H, Salmon N & Bañares-Alcántara R},
journal={Renewable Energy},
volume={241},
pages={122335-122335},
publisher={Elsevier},
year = "2025"
}
Facilitating India’s Deep Decarbonisation Through Sector Coupling of Electricity with Green Hydrogen and Ammonia
Cesaro Z, Bramstoft R, Bañares-Alcántara R & Ives MC (2025), Energy Storage and Applications, 2(2), 4
BibTeX
@article{facilitatingind-2025/3,
title={Facilitating India’s Deep Decarbonisation Through Sector Coupling of Electricity with Green Hydrogen and Ammonia},
author={Cesaro Z, Bramstoft R, Bañares-Alcántara R & Ives MC},
journal={Energy Storage and Applications},
volume={2},
pages={4},
publisher={MDPI},
year = "2025"
}
Towards decarbonizing the supply chain of dairy industry: current practice and emerging strategies
Ni H, Zeng H, Liu Z, Li W, Miao S et al. (2025), Carbon Neutrality, 4(1)
BibTeX
@article{towardsdecarbon-2025/3,
title={Towards decarbonizing the supply chain of dairy industry: current practice and emerging strategies},
author={Ni H, Zeng H, Liu Z, Li W, Miao S et al.},
journal={Carbon Neutrality},
volume={4},
number={8},
publisher={Springer Nature Singapore},
year = "2025"
}
Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.
Qiu S, Hu B, Zhao J, Xu W & Yang A (2025), Briefings in bioinformatics, 26(2), bbaf114
BibTeX
@article{seqtoptasequenc-2025/3,
title={Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature.},
author={Qiu S, Hu B, Zhao J, Xu W & Yang A},
journal={Briefings in bioinformatics},
volume={26},
pages={bbaf114},
publisher={Oxford University Press (OUP)},
year = "2025"
}
Assessing the net carbon removal potential by a combination of direct air capture and recycled concrete aggregates carbonation
Chen L & Yang A (2025), Resources, Conservation and Recycling, 212
BibTeX
@article{assessingthenet-2025/1,
title={Assessing the net carbon removal potential by a combination of direct air capture and recycled concrete aggregates carbonation},
author={Chen L & Yang A},
journal={Resources, Conservation and Recycling},
volume={212},
year = "2025"
}
Quorum sensing regulating the productivity and stability of cross-feeding cocultivation
Chen D, Qu Z, Yang S, Li Y, Yu S et al. (2024), Chemical Engineering Journal, 502, 158167
BibTeX
@article{quorumsensingre-2024/12,
title={Quorum sensing regulating the productivity and stability of cross-feeding cocultivation},
author={Chen D, Qu Z, Yang S, Li Y, Yu S et al.},
journal={Chemical Engineering Journal},
volume={502},
pages={158167},
publisher={Elsevier},
year = "2024"
}
Assembly of functional microbial ecosystems: from molecular circuits to communities.
Wu S, Zhou Y, Dai L, Yang A & Qiao J (2024), FEMS microbiology reviews, fuae026
BibTeX
@article{assemblyoffunct-2024/11,
title={Assembly of functional microbial ecosystems: from molecular circuits to communities.},
author={Wu S, Zhou Y, Dai L, Yang A & Qiao J},
journal={FEMS microbiology reviews},
pages={fuae026},
publisher={Oxford University Press (OUP)},
year = "2024"
}
Green ammonia imports could supplement long-duration energy storage in the UK
Palazzi C, Nayak-Luke R, Verschuur J, Salmon N, Hall J et al. (2024), Environmental Research Energy, 1(4), 043001-043001
BibTeX
@article{greenammoniaimp-2024/9,
title={Green ammonia imports could supplement long-duration energy storage in the UK},
author={Palazzi C, Nayak-Luke R, Verschuur J, Salmon N, Hall J et al.},
journal={Environmental Research Energy},
volume={1},
pages={043001-043001},
publisher={IOP Publishing},
year = "2024"
}
Design and analysis of quorum sensing language “Interpreter” ecosystem for microbial community
Wu S, Zhang H, Zhou Y, Xu C, Yuan B et al. (2024), Chemical Engineering Journal, 496, 153148
BibTeX
@article{designandanalys-2024/9,
title={Design and analysis of quorum sensing language “Interpreter” ecosystem for microbial community},
author={Wu S, Zhang H, Zhou Y, Xu C, Yuan B et al.},
journal={Chemical Engineering Journal},
volume={496},
pages={153148},
publisher={Elsevier},
year = "2024"
}
Potential of reducing CO2 emissions in cement production through altering clinker compositions
Williams F & Yang A (2024), Industrial & Engineering Chemistry Research, 63(40), 17158-17167
BibTeX
@article{potentialofredu-2024/9,
title={Potential of reducing CO2 emissions in cement production through altering clinker compositions},
author={Williams F & Yang A},
journal={Industrial & Engineering Chemistry Research},
volume={63},
pages={17158-17167},
publisher={American Chemical Society},
year = "2024"
}
Exploiting the temporal characteristics of tidal stream power for green ammonia production
Driscoll H, Salmon N & Bañares-Alcántara R (2024), Renewable Energy, 120377-120377
BibTeX
@article{exploitingthete-2024/3,
title={Exploiting the temporal characteristics of tidal stream power for green ammonia production},
author={Driscoll H, Salmon N & Bañares-Alcántara R},
journal={Renewable Energy},
pages={120377-120377},
publisher={Elsevier},
year = "2024"
}
Optimal fuel supply of green ammonia to decarbonise global shipping
Verschuur J, Salmon N, Hall J & Bañares-Alcántara R (2024), Environmental Research Infrastructure and Sustainability, 4(1), 015001-015001
BibTeX
@article{optimalfuelsupp-2024/3,
title={Optimal fuel supply of green ammonia to decarbonise global shipping},
author={Verschuur J, Salmon N, Hall J & Bañares-Alcántara R},
journal={Environmental Research Infrastructure and Sustainability},
volume={4},
pages={015001-015001},
publisher={IOP Publishing},
year = "2024"
}
2023 roadmap on ammonia as a carbon-free fuel
David WIF, Agnew GD, Bañares-Alcántara R, Barth J, Hansen JB et al. (2024), Journal of Physics Energy, 6(2)
BibTeX
@article{roadmaponammoni-2024/2,
title={2023 roadmap on ammonia as a carbon-free fuel},
author={David WIF, Agnew GD, Bañares-Alcántara R, Barth J, Hansen JB et al.},
journal={Journal of Physics Energy},
volume={6},
number={021501},
publisher={IOP Publishing},
year = "2024"
}
Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism
Qiu S, Huang Y, Liang S, Zeng H & Yang A (2024), Microbial Biotechnology, 17(2)
BibTeX
@article{systematiceluci-2024/2,
title={Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism},
author={Qiu S, Huang Y, Liang S, Zeng H & Yang A},
journal={Microbial Biotechnology},
volume={17},
number={e14425},
publisher={Wiley},
year = "2024"
}
The Role of Tidal Stream Energy in Green Ammonia and Green Hydrogen Production in The English Channel
Driscoll H, Palazzi C & Bañares-Alcántara R (2024), 00, 1-4
BibTeX
@inproceedings{theroleoftidals-2024/1,
title={The Role of Tidal Stream Energy in Green Ammonia and Green Hydrogen Production in The English Channel},
author={Driscoll H, Palazzi C & Bañares-Alcántara R},
booktitle={OCEANS 2024 - Halifax},
pages={1-4},
year = "2024"
}
Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion
Williams F, Yang A & Nhuchhen DR (2024), Energy Conversion and Management, 300
BibTeX
@article{decarbonisation-2024/1,
title={Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion},
author={Williams F, Yang A & Nhuchhen DR},
journal={Energy Conversion and Management},
volume={300},
year = "2024"
}
DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates
Qiu S, Zhao S & Yang A (2024), Briefings in Bioinformatics, 25(1)
BibTeX
@article{dltkcatdeeplear-2024/1,
title={DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates},
author={Qiu S, Zhao S & Yang A},
journal={Briefings in Bioinformatics},
volume={25},
number={bbad506},
publisher={Oxford University Press},
year = "2024"
}
Food–energy–water nexus optimization brings substantial reduction of urban resource consumption and greenhouse gas emissions
Zhang P, Zhang L, Hao Y, Xu M, Pang M et al. (2024), PNAS Nexus, 3(2)
BibTeX
@article{foodenergywater-2024/1,
title={Food–energy–water nexus optimization brings substantial reduction of urban resource consumption and greenhouse gas emissions},
author={Zhang P, Zhang L, Hao Y, Xu M, Pang M et al.},
journal={PNAS Nexus},
volume={3},
number={pgae028},
publisher={Oxford University Press},
year = "2024"
}