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Publications from the Systems Engineering group, Department of Engineering Science, University of Oxford

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Systems Engineering

Most Recent Publications

Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion

Williams F, Yang A & Nhuchhen DR (2024), Energy Conversion and Management, 300

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@article{decarbonisation-2024/1,
  title={Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion},
  author={Williams F, Yang A & Nhuchhen DR},
  journal={Energy Conversion and Management},
  volume={300},
  year = "2024"
}

DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates

Qiu S, Zhao S & Yang A (2024), Briefings in Bioinformatics, 25(1)

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@article{dltkcatdeeplear-2024/1,
  title={DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates},
  author={Qiu S, Zhao S & Yang A},
  journal={Briefings in Bioinformatics},
  volume={25},
  number={bbad506},
  publisher={Oxford University Press},
  year = "2024"
}

Re-organising nutrients flows in Leicestershire: systemic innovation to transform nutrient flows for environmental and socioeconomic benefits

Yang A, Ng KS, Thompson I, Tsui T, Wei Z et al. (2023)

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@misc{reorganisingnut-2023/12,
  title={Re-organising nutrients flows in Leicestershire: systemic innovation to transform nutrient flows for environmental and socioeconomic benefits},
  author={Yang A, Ng KS, Thompson I, Tsui T, Wei Z et al.},
  year = "2023"
}

Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.

Qiu S, Yang A & Zeng H (2023), PLoS computational biology, 19(8), e1011391

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@article{fluxbalanceanal-2023/8,
  title={Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.},
  author={Qiu S, Yang A & Zeng H},
  journal={PLoS computational biology},
  volume={19},
  pages={e1011391},
  year = "2023"
}

Dynamic metagenome-scale metabolic modeling of a yogurt bacterial community.

Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al. (2023), Biotechnology and bioengineering, 120(8), 2186-2198

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@article{dynamicmetageno-2023/8,
  title={Dynamic metagenome-scale metabolic modeling of a yogurt bacterial community.},
  author={Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al.},
  journal={Biotechnology and bioengineering},
  volume={120},
  pages={2186-2198},
  year = "2023"
}

Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.

Qiu S, Yang A & Zeng H (2023), PLoS computational biology, 19(8), e1011391

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@article{fluxbalanceanal-2023/8,
  title={Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.},
  author={Qiu S, Yang A & Zeng H},
  journal={PLoS computational biology},
  volume={19},
  pages={e1011391},
  year = "2023"
}

Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits

Devlin A, Kossen J, Goldie-Jones H & Yang A (2023), Nature Communications, 14(1)

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@article{globalgreenhydr-2023/5,
  title={Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits},
  author={Devlin A, Kossen J, Goldie-Jones H & Yang A},
  journal={Nature Communications},
  volume={14},
  number={2578},
  publisher={Springer Science and Business Media LLC},
  year = "2023"
}

Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits.

Devlin A, Kossen J, Goldie-Jones H & Yang A (2023), Nature communications, 14(1), 2578

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@article{globalgreenhydr-2023/5,
  title={Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits.},
  author={Devlin A, Kossen J, Goldie-Jones H & Yang A},
  journal={Nature communications},
  volume={14},
  pages={2578},
  year = "2023"
}

Surrogate modelling-assisted comparison of reactor schemes for carbon dioxide removal by enhanced weathering of minerals using seawater

Zhang J, Yang A, Darton R, Xing L & Vaughan A (2023), Chemical Engineering Journal, 461, 141804-141804

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@article{surrogatemodell-2023/4,
  title={Surrogate modelling-assisted comparison of reactor schemes for carbon dioxide removal by enhanced weathering of minerals using seawater},
  author={Zhang J, Yang A, Darton R, Xing L & Vaughan A},
  journal={Chemical Engineering Journal},
  volume={461},
  number={141804},
  pages={141804-141804},
  publisher={Elsevier BV},
  year = "2023"
}

Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture

Qiu S, Yang Z, Zeng H, Wang B & Yang A (2023), 52, 2619-2624

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@misc{dynamicmicrobia-2023/1,
  title={Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture},
  author={Qiu S, Yang Z, Zeng H, Wang B & Yang A},
  year = "2023"
}

Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability

Bhasker Nair PNS, Yang NHN, Zhang W, Ng KS & Yang A (2023), 52, 1387-1392

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@misc{modelbasedoptim-2023/1,
  title={Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability},
  author={Bhasker Nair PNS, Yang NHN, Zhang W, Ng KS & Yang A},
  year = "2023"
}

Development of a system model to predict flows and performance of regional waste management planning: A case study of England.

Ng KS & Yang A (2023), Journal of environmental management, 325(Pt B), 116585

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@article{developmentofas-2023/1,
  title={Development of a system model to predict flows and performance of regional waste management planning: A case study of England.},
  author={Ng KS & Yang A},
  journal={Journal of environmental management},
  volume={325},
  pages={116585},
  year = "2023"
}

Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture

Qiu S, Yang Z, Zeng H, Wang B & Yang A (2023), 52, 2619-2624

Altmetric score is
BibTeX View PDF
@misc{dynamicmicrobia-2023/1,
  title={Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture},
  author={Qiu S, Yang Z, Zeng H, Wang B & Yang A},
  year = "2023"
}

Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability

Bhasker Nair PNS, Yang NHN, Zhang W, Ng KS & Yang A (2023), 52, 1387-1392

Altmetric score is
BibTeX View PDF
@misc{modelbasedoptim-2023/1,
  title={Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability},
  author={Bhasker Nair PNS, Yang NHN, Zhang W, Ng KS & Yang A},
  year = "2023"
}

Dynamic community-level metabolic modeling for fermentation kinetics and metabolic interactions of the yogurt starter culture based on metagenomic analysis

Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al. (2023)

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@misc{dynamiccommunit-2023/,
  title={Dynamic community-level metabolic modeling for fermentation kinetics and metabolic interactions of the yogurt starter culture based on metagenomic analysis},
  author={Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al.},
  year = "2023"
}

Potential of orthogonal and cross-talk quorum sensing for dynamic regulation in cocultivation

Wu S, Qiao J, Yang A & Liu C (2022), Chemical Engineering Journal, 445

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@article{potentialoforth-2022/10,
  title={Potential of orthogonal and cross-talk quorum sensing for dynamic regulation in cocultivation},
  author={Wu S, Qiao J, Yang A & Liu C},
  journal={Chemical Engineering Journal},
  volume={445},
  year = "2022"
}

Development of a system model to predict flows and performance of regional waste management planning: a case study of England

Ng KS & Yang A (2022), Journal of Environmental Management, 325

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@article{developmentofas-2022/10,
  title={Development of a system model to predict flows and performance of regional waste management planning: a case study of England},
  author={Ng KS & Yang A},
  journal={Journal of Environmental Management},
  volume={325},
  number={116585},
  publisher={Elsevier},
  year = "2022"
}

Quorum sensing-based interactions among drugs, microbes, and diseases.

Wu S, Yang S, Wang M, Song N, Feng J et al. (2022), Science China. Life sciences

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@article{quorumsensingba-2022/8,
  title={Quorum sensing-based interactions among drugs, microbes, and diseases.},
  author={Wu S, Yang S, Wang M, Song N, Feng J et al.},
  journal={Science China. Life sciences},
  year = "2022"
}

Urban bioeconomy: uncovering its components, impacts and the Urban Bio-Symbiosis

Yang N-HN & Yang A (2022), Cleaner Production Letters, 3

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@article{urbanbioeconomy-2022/8,
  title={Urban bioeconomy: uncovering its components, impacts and the Urban Bio-Symbiosis},
  author={Yang N-HN & Yang A},
  journal={Cleaner Production Letters},
  volume={3},
  number={100015},
  publisher={Elsevier},
  year = "2022"
}

Machine learning aided construction of the quorum sensing communication network for human gut microbiota

Wu S, Feng J, Liu C, Wu H, Qiu Z et al. (2022), Nature Communications, 13(1)

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@article{machinelearning-2022/6,
  title={Machine learning aided construction of the quorum sensing communication network for human gut microbiota},
  author={Wu S, Feng J, Liu C, Wu H, Qiu Z et al.},
  journal={Nature Communications},
  volume={13},
  number={3079},
  publisher={Springer Science and Business Media LLC},
  year = "2022"
}