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Showing 162 publications by Susanna-Assunta Sansone

ISA API: An open platform for interoperable life science experimental metadata.

Johnson D, Batista D, Cochrane K, Davey RP, Etuk A et al. (2021), GigaScience, 10(9)

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@article{isaapianopenpla-2021/9,
  title={ISA API: An open platform for interoperable life science experimental metadata.},
  author={Johnson D, Batista D, Cochrane K, Davey RP, Etuk A et al.},
  journal={GigaScience},
  volume={10},
  year = "2021"
}

Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group

Austin C, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al. (2020)

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@article{fosteringglobal-2020/11,
  title={Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group},
  author={Austin C, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al.},
  journal={},
  year = "2020"
}

COPO: a metadata platform for brokering FAIR data in the life sciences

Shaw F, Etuk A, Minotto A, Gonzalez-Beltran A, Johnson D et al. (2020), F1000Research, 9, 495-495

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@article{copoametadatapl-2020/6,
  title={COPO: a metadata platform for brokering FAIR data in the life sciences},
  author={Shaw F, Etuk A, Minotto A, Gonzalez-Beltran A, Johnson D et al.},
  journal={F1000Research},
  volume={9},
  pages={495-495},
  publisher={F1000 Research Ltd},
  year = "2020"
}

COVID-19 pandemic reveals the peril of ignoring metadata standards

Schriml LM, Chuvochina M, Davies N, Eloe-Fadrosh EA, Finn RD et al. (2020), Scientific Data, 7(1)

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@article{covidpandemicre-2020/6,
  title={COVID-19 pandemic reveals the peril of ignoring metadata standards},
  author={Schriml LM, Chuvochina M, Davies N, Eloe-Fadrosh EA, Finn RD et al.},
  journal={Scientific Data},
  volume={7},
  number={188},
  publisher={Springer Nature},
  year = "2020"
}

Community standards for open cell migration data

Gonzalez-Beltran AN, Masuzzo P, Ampe C, Rocca-Serra P, Sansone S et al. (2020), GigaScience, 5(May 2020)

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@article{communitystanda-2020/5,
  title={Community standards for open cell migration data},
  author={Gonzalez-Beltran AN, Masuzzo P, Ampe C, Rocca-Serra P, Sansone S et al.},
  journal={GigaScience},
  volume={5},
  number={giaa041},
  publisher={Oxford University Press},
  year = "2020"
}

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN et al. (2020), New Phytologist

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@article{enablingreusabi-2020/3,
  title={Enabling reusability of plant phenomic datasets with MIAPPE 1.1.},
  author={Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN et al.},
  journal={New Phytologist },
  publisher={Wiley},
  year = "2020"
}

TeSS: a platform for discovering life science training opportunities

Beard N, Bacall F, Nenadic A, Thurston M, Goble CA et al. (2020), Bioinformatics, 36(10), 3290-3291

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@article{tessaplatformfo-2020/2,
  title={TeSS: a platform for discovering life science training opportunities},
  author={Beard N, Bacall F, Nenadic A, Thurston M, Goble CA et al.},
  journal={Bioinformatics},
  volume={36},
  pages={3290-3291},
  publisher={Oxford University Press},
  year = "2020"
}

Semantic concept schema of the linear mixed model of experimental observations

Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN et al. (2020), Scientific Data, 7(1)

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@article{semanticconcept-2020/2,
  title={Semantic concept schema of the linear mixed model of experimental observations},
  author={Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN et al.},
  journal={Scientific Data},
  volume={7},
  number={70},
  publisher={Nature Research },
  year = "2020"
}

Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.

Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al. (2020), Wellcome open research, 5, 267

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@article{fosteringglobal-2020/1,
  title={Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group. },
  author={Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al.},
  journal={Wellcome open research},
  volume={5},
  pages={267},
  year = "2020"
}

Experiment design driven FAIRification of omics data matrices, an exemplar

Rocca-Serra P & Sansone S (2019), Scientific Data, 6, 271

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@article{experimentdesig-2019/12,
  title={Experiment design driven FAIRification of omics data matrices, an exemplar},
  author={Rocca-Serra P & Sansone S},
  journal={Scientific Data},
  volume={6},
  pages={271},
  publisher={Springer Nature},
  year = "2019"
}

FAIRshake: Toolkit to evaluate the FAIRness of research digital resources

Clarke DJB, Wang L, Wojciechowicz ML, Jagodnik KM, Silverstein MC et al. (2019), Cell Systems, 9(5), 417-421

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@article{fairshaketoolki-2019/11,
  title={FAIRshake: Toolkit to evaluate the FAIRness of research digital resources},
  author={Clarke DJB, Wang L, Wojciechowicz ML, Jagodnik KM, Silverstein MC et al.},
  journal={Cell Systems},
  volume={9},
  pages={417-421},
  publisher={Cell Press},
  year = "2019"
}

Evaluating FAIR maturity through a scalable, automated, community-governed framework

Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al. (2019), Scientific Data, 6

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@article{evaluatingfairm-2019/9,
  title={Evaluating FAIR maturity through a scalable, automated, community-governed framework},
  author={Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al.},
  journal={Scientific Data},
  volume={6},
  number={174},
  publisher={Springer Nature},
  year = "2019"
}

Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.

Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al. (2019), Scientific Data, 6

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@article{authorcorrectio-2019/9,
  title={Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.},
  author={Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al.},
  journal={Scientific Data},
  volume={6},
  number={230},
  publisher={Nature Research},
  year = "2019"
}

Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework

Sansone S-A, McQuilton P, ROCCA-SERRA P & Batista D (2019), Scientific Data

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@article{evaluatingfairc-2019/9,
  title={Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework},
  author={Sansone S-A, McQuilton P, ROCCA-SERRA P & Batista D},
  journal={Scientific Data},
  publisher={Nature Research (part of Springer Nature)},
  year = "2019"
}

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M et al. (2019), Science (New York, N.Y.), 364(6439), 446

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@article{consentinsuffic-2019/5,
  title={Consent insufficient for data release-Response.},
  author={Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M et al.},
  journal={Science (New York, N.Y.)},
  volume={364},
  pages={446},
  year = "2019"
}

FAIRsharing as a community approach to standards, repositories and policies

Sansone S, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M et al. (2019), Nature Biotechnology, 37(4), 358-367

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@article{fairsharingasac-2019/4,
  title={FAIRsharing as a community approach to standards, repositories and policies},
  author={Sansone S, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M et al.},
  journal={Nature Biotechnology},
  volume={37},
  pages={358-367},
  publisher={Springer Nature},
  year = "2019"
}

FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies

Sansone S-A, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M et al. (2019), Nature Biotechnology

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@article{fairsharingacoh-2019/4,
  title={FAIRsharing, a cohesive community approach to the growth in standards, repositories and policies},
  author={Sansone S-A, McQuilton P, Rocca-Serra P, Gonzalez-Beltran A, Izzo M et al.},
  journal={Nature Biotechnology},
  publisher={Nature Research},
  year = "2019"
}

Interoperable and scalable data analysis with microservices: applications in metabolomics

Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M et al. (2019), Bioinformatics, 35(9), 3752-3760

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@article{interoperablean-2019/3,
  title={Interoperable and scalable data analysis with microservices: applications in metabolomics},
  author={Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M et al.},
  journal={Bioinformatics},
  volume={35},
  pages={3752-3760},
  publisher={Oxford University Press},
  year = "2019"
}

Addendum: The FAIR Guiding Principles for scientific data management and stewardship.

Appleton G, Axton M, Baak A, Blomberg N, Boiten J-W et al. (2019), Scientific data(1)

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@article{addendumthefair-2019/3,
  title={Addendum: The FAIR Guiding Principles for scientific data management and stewardship.},
  author={Appleton G, Axton M, Baak A, Blomberg N, Boiten J-W et al.},
  journal={Scientific data},
  year = "2019"
}

PhenoMeNal: processing and analysis of metabolomics data in the cloud.

Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M et al. (2019), GigaScience(2)

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@article{phenomenalproce-2019/2,
  title={PhenoMeNal: processing and analysis of metabolomics data in the cloud.},
  author={Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M et al.},
  journal={GigaScience},
  publisher={Oxford University Press},
  year = "2019"
}

Toward unrestricted use of public genomic data

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M et al. (2019), Science, 363(6425), 350-352

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@article{towardunrestric-2019/1,
  title={Toward unrestricted use of public genomic data},
  author={Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M et al.},
  journal={Science},
  volume={363},
  pages={350-352},
  publisher={American Association for the Advancement of Science (AAAS)},
  year = "2019"
}

Mapping subjects and domains across the humanities and natural sciences in FAIRsharing

Lister AL, McQuilton P, Thurston M & Sansone SA (2019), CEUR Workshop Proceedings, 2849, 133-134

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@inproceedings{mappingsubjects-2019/1,
  title={Mapping subjects and domains across the humanities and natural sciences in FAIRsharing},
  author={Lister AL, McQuilton P, Thurston M & Sansone SA},
  pages={133-134},
  year = "2019"
}

PhenoMeNal: processing and analysis of metabolomics data in the cloud

Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M et al. (2018), GigaScience, 8(2), giy149

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@article{phenomenalproce-2018/12,
  title={PhenoMeNal: processing and analysis of metabolomics data in the cloud},
  author={Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M et al.},
  journal={GigaScience},
  volume={8},
  pages={giy149},
  publisher={Oxford University Press},
  year = "2018"
}

A design framework and exemplar metrics for FAIRness

Wilkinson MD, Sansone S-A, Schultes E, Doorn P, Bonino da Silva Santos LO et al. (2018), Scientific Data, 5

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@article{adesignframewor-2018/6,
  title={A design framework and
exemplar metrics for FAIRness},
  author={Wilkinson MD, Sansone S-A, Schultes E, Doorn P, Bonino da Silva Santos LO et al.},
  journal={Scientific Data},
  volume={5},
  publisher={Nature Publishing Group},
  year = "2018"
}

A computational framework for complex disease stratification from multiple large-scale datasets.

De Meulder B, Lefaudeux D, Mazein A, Chaiboonchoe A, Ahmed H et al. (2018), BMC Systems Biology, 12(60)

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@article{acomputationalf-2018/5,
  title={A computational framework for complex disease stratification from multiple large-scale datasets.},
  author={De Meulder B, Lefaudeux D, Mazein A, Chaiboonchoe A, Ahmed H et al.},
  journal={BMC Systems Biology},
  volume={12},
  publisher={BioMed Central},
  year = "2018"
}

CEDAR: Semantic Web Technology to Support Open Science

Musen MA, Sansone SA, Cheung KH, Kleinstein SH, Crafts M et al. (2018), The Web Conference 2018 - Companion of the World Wide Web Conference, WWW 2018, 427-428

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@inproceedings{cedarsemanticwe-2018/4,
  title={CEDAR: Semantic Web Technology to Support Open Science},
  author={Musen MA, Sansone SA, Cheung KH, Kleinstein SH, Crafts M et al.},
  pages={427-428},
  year = "2018"
}

High-quality science requires high-quality open data infrastructure

Sansone S, Cruse P & Thorley M (2018), Scientific Data, 5

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@article{highqualityscie-2018/2,
  title={High-quality science requires high-quality open data infrastructure},
  author={Sansone S, Cruse P & Thorley M},
  journal={Scientific Data},
  volume={5},
  number={180027},
  publisher={Springer Nature},
  year = "2018"
}

DataMed - an open source discovery index for finding biomedical datasets

Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E et al. (2018), Journal of the American Medical Informatics Association, 25(3), 300-308

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@article{datamedanopenso-2018/1,
  title={DataMed - an open source discovery index for finding biomedical datasets},
  author={Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E et al.},
  journal={Journal of the American Medical Informatics Association},
  volume={25},
  pages={300-308},
  publisher={Oxford University Press},
  year = "2018"
}

The international MAQC Society launches to enhance reproducibility of high-throughput technologies

Shi L, Kusko R, Wolfinger RD, Haibe-Kains B, Fischer M et al. (2017), Nature Biotechnology, 35(12), 1127-1128

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@article{theinternationa-2017/12,
  title={The international MAQC Society launches to enhance reproducibility of high-throughput technologies},
  author={Shi L, Kusko R, Wolfinger RD, Haibe-Kains B, Fischer M et al.},
  journal={Nature Biotechnology},
  volume={35},
  pages={1127-1128},
  publisher={Nature Publishing Group},
  year = "2017"
}

Data discovery with DATS: exemplar adoptions and lessons learned

Gonzalez-Beltran A, Campbell J, Dunn P, Guijarro D, Ionescu S et al. (2017), Journal of the American Medical Informatics Association, 25(1), 13-16

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@article{datadiscoverywi-2017/12,
  title={Data discovery with DATS: exemplar adoptions and lessons learned},
  author={Gonzalez-Beltran A, Campbell J, Dunn P, Guijarro D, Ionescu S et al.},
  journal={Journal of the American Medical Informatics Association},
  volume={25},
  pages={13-16},
  publisher={Oxford University Press},
  year = "2017"
}

Interoperable and scalable data analysis with microservices: Applications in Metabolomics

Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M et al. (2017)

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@article{interoperablean-2017/11,
  title={Interoperable and scalable data analysis with microservices: Applications in Metabolomics},
  author={Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M et al.},
  journal={},
  publisher={Cold Spring Harbor Laboratory},
  year = "2017"
}

A design framework and exemplar metrics for FAIRness

Wilkinson M, Sansone SUSANNA, Schultes E, Doorn P, Bonino da Silva Santos LO et al. (2017)

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@article{adesignframewor-2017/11,
  title={A design framework and exemplar metrics for FAIRness},
  author={Wilkinson M, Sansone SUSANNA, Schultes E, Doorn P, Bonino da Silva Santos LO et al.},
  journal={},
  publisher={Cold Spring Harbor Laboratory},
  year = "2017"
}

The future of metabolomics in ELIXIR.

van Rijswijk M, van Rijswijk M, Beirnaert C, Beirnaert C, Caron C et al. (2017), F1000Research, 6, 1649-1649

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@article{thefutureofmeta-2017/10,
  title={The future of metabolomics in ELIXIR.},
  author={van Rijswijk M, van Rijswijk M, Beirnaert C, Beirnaert C, Caron C et al.},
  journal={F1000Research},
  volume={6},
  pages={1649-1649},
  publisher={F1000},
  year = "2017"
}

Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action

Pawlik A, van Gelder CWG, Nenadic A, Palagi PM, Korpelainen E et al. (2017), F1000 Research, 6

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@article{developingastra-2017/7,
  title={Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action},
  author={Pawlik A, van Gelder CWG, Nenadic A, Palagi PM, Korpelainen E et al.},
  journal={F1000 Research},
  volume={6},
  number={1040},
  publisher={F1000Research},
  year = "2017"
}

DATS: the data tag suite to enable discoverability of datasets

Sansone S-A, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS et al. (2017), Scientific Data

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@article{datsthedatatags-2017/6,
  title={DATS: the data tag suite to enable discoverability of datasets},
  author={Sansone S-A, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS et al.},
  journal={Scientific Data},
  publisher={Nature Publishing Group},
  year = "2017"
}

Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

McMurry JA, Juty N, Blomberg N, Gonzalez-Beltran A, Rocca-Serra P et al. (2017), PLoS Biology, 15(6)

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@article{identifiersfort-2017/6,
  title={Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data},
  author={McMurry JA, Juty N, Blomberg N, Gonzalez-Beltran A, Rocca-Serra P et al.},
  journal={PLoS Biology},
  volume={15},
  number={e2001414},
  publisher={Public Library of Science},
  year = "2017"
}

Finding useful data across multiple biomedical data repositories using DataMed.

Ohno-Machado L, Sansone S-A, Alter G, Fore I, Grethe J et al. (2017), Nature genetics, 49(6), 816-819

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@article{findingusefulda-2017/5,
  title={Finding useful data across multiple biomedical data repositories using DataMed.},
  author={Ohno-Machado L, Sansone S-A, Alter G, Fore I, Grethe J et al.},
  journal={Nature genetics},
  volume={49},
  pages={816-819},
  year = "2017"
}

BioSharing: harnessing metadata standards for the data commons

Sansone S-A, Gonzalez-Beltran A, Rocca-Serra P, McQuilton P, Izzo M et al. (2017), bioRxiv

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@article{biosharingharne-2017/5,
  title={BioSharing: harnessing metadata standards for the data commons},
  author={Sansone S-A, Gonzalez-Beltran A, Rocca-Serra P, McQuilton P, Izzo M et al.},
  journal={bioRxiv},
  publisher={Cold Spring Harbor Laboratory},
  year = "2017"
}

Discovering and linking public omics data sets using the Omics Discovery Index.

Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM et al. (2017), Nature Biotechnology, 35(5), 406-409

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@article{discoveringandl-2017/5,
  title={Discovering and linking public omics data sets using the Omics Discovery Index.},
  author={Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM et al.},
  journal={Nature Biotechnology},
  volume={35},
  pages={406-409},
  publisher={Nature Publishing Group},
  year = "2017"
}

ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR

Larcombe L, Hendricusdottir R, Attwood TK, Bacall F, Beard N et al. (2017), F1000 Research

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@article{elixirukroleinb-2017/1,
  title={ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR},
  author={Larcombe L, Hendricusdottir R, Attwood TK, Bacall F, Beard N et al.},
  journal={F1000 Research},
  publisher={F1000Research},
  year = "2017"
}

Measures for interoperability of phenotypic data: minimum information requirements and formatting.

Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D et al. (2016), Plant Methods, 12(1), 44

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@article{measuresforinte-2016/11,
  title={Measures for interoperability of phenotypic data: minimum information requirements and formatting.},
  author={Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D et al.},
  journal={Plant Methods},
  volume={12},
  pages={44},
  publisher={BioMed Central},
  year = "2016"
}

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.

McQuilton P, Gonzalez-Beltran A, Rocca-Serra P, Thurston M, Lister A et al. (2016), Database, 2016

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@article{biosharingcurat-2016/5,
  title={BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.},
  author={McQuilton P, Gonzalez-Beltran A, Rocca-Serra P, Thurston M, Lister A et al.},
  journal={Database},
  volume={2016},
  publisher={Oxford University Press},
  year = "2016"
}

The ontology for biomedical investigations.

Lin Y, Lister AL, Lord P, Malone J, Manduchi E et al. (2016), PLoS One, 11(4), e0154556

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@article{theontologyforb-2016/4,
  title={The ontology for biomedical investigations.},
  author={Lin Y, Lister AL, Lord P, Malone J, Manduchi E et al.},
  journal={PLoS One},
  volume={11},
  pages={e0154556},
  publisher={Public Library of Science},
  year = "2016"
}

Data standards can boost metabolomics research, and if there is a will, there is a way.

Rocca-Serra P, Salek RM, Arita M, Correa E, Dayalan S et al. (2016), Metabolomics : Official journal of the Metabolomic Society, 12(1), 14

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@article{datastandardsca-2016/1,
  title={Data standards can boost metabolomics research, and if there is a will, there is a way.},
  author={Rocca-Serra P, Salek RM, Arita M, Correa E, Dayalan S et al.},
  journal={Metabolomics : Official journal of the Metabolomic Society},
  volume={12},
  pages={14},
  publisher={Springer US},
  year = "2016"
}

The FAIR Guiding Principles for scientific data management and stewardship.

Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A et al. (2016), Scientific data

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@article{thefairguidingp-2016/1,
  title={The FAIR Guiding Principles for scientific data management and stewardship.},
  author={Dumontier M, Aalbersberg IJ, Appleton G, Axton M, Baak A et al.},
  journal={Scientific data},
  publisher={Nature Publishing Group},
  year = "2016"
}

Coordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Salek RM, Neumann S, Schober D, Hummel J, Billiau K et al. (2015), Metabolomics, 11(6), 1598-1599

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@article{coordinationofs-2015/12,
  title={Coordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access},
  author={Salek RM, Neumann S, Schober D, Hummel J, Billiau K et al.},
  journal={Metabolomics},
  volume={11},
  pages={1598-1599},
  publisher={Springer},
  year = "2015"
}

The center for expanded data annotation and retrieval.

Musen MA, Bean CA, Cheung K-H, Dumontier M, Durante KA et al. (2015), Journal of the American Medical Informatics Association : JAMIA, 22(6), 1148-1152

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@article{thecenterforexp-2015/6,
  title={The center for expanded data annotation and retrieval.},
  author={Musen MA, Bean CA, Cheung K-H, Dumontier M, Durante KA et al.},
  journal={Journal of the American Medical Informatics Association : JAMIA},
  volume={22},
  pages={1148-1152},
  publisher={Oxford University Press},
  year = "2015"
}

Publishing descriptions of non-public clinical datasets: guidance for researchers, repositories, editors and funding organisations

Hrynaszkiewicz I, Khodiyar V, Hufton A & Sansone S-A (2015)

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@article{publishingdescr-2015/6,
  title={Publishing descriptions of non-public clinical datasets: guidance for researchers, repositories, editors and funding organisations},
  author={Hrynaszkiewicz I, Khodiyar V, Hufton A & Sansone S-A},
  journal={},
  year = "2015"
}

The Resource Identification Initiative: A cultural shift in publishing

Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN et al. (2015), F1000Research, 4

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@article{theresourceiden-2015/5,
  title={The Resource Identification Initiative: A cultural shift in publishing},
  author={Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN et al.},
  journal={F1000Research},
  volume={4},
  year = "2015"
}

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.

Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P et al. (2015), PLoS computational biology, 11(4), e1004143

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@article{goblettheglobal-2015/4,
  title={GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.},
  author={Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P et al.},
  journal={PLoS computational biology},
  volume={11},
  pages={e1004143},
  year = "2015"
}

An open data ecosystem for cell migration research.

Masuzzo P, Martens L, 2014 Cell Migration Workshop Participants , Ampe C, Anderson KI et al. (2015), Trends in cell biology, 25(2), 55-58

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@article{anopendataecosy-2015/2,
  title={An open data ecosystem for cell migration research.},
  author={Masuzzo P, Martens L, 2014 Cell Migration Workshop Participants , Ampe C, Anderson KI et al.},
  journal={Trends in cell biology},
  volume={25},
  pages={55-58},
  year = "2015"
}

Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.

Rocca-Serra P, Walls R, Parnell J, Gallery R, Zheng J et al. (2015), Database : the journal of biological databases and curation, 2015

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@article{modelingamicrob-2015/1,
  title={Modeling a microbial community and biodiversity assay with OBO Foundry ontologies: the interoperability gains of a modular approach.},
  author={Rocca-Serra P, Walls R, Parnell J, Gallery R, Zheng J et al.},
  journal={Database : the journal of biological databases and curation},
  volume={2015},
  year = "2015"
}

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics.

González-Beltrán A, Li P, Zhao J, Avila-Garcia MS, Roos M et al. (2015), PloS one, 10(7), e0127612

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@article{frompeerreviewe-2015/1,
  title={From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics.},
  author={González-Beltrán A, Li P, Zhao J, Avila-Garcia MS, Roos M et al.},
  journal={PloS one},
  volume={10},
  pages={e0127612},
  year = "2015"
}

Informatics Approaches to Data Preservation and Analysis in Protein Electrostatics

Baker NA, Dowling C, Gosink L, Pulsipher T & Sansone S-A (2015), BIOPHYSICAL JOURNAL, 108(2), 369A-369A

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@inproceedings{informaticsappr-2015/1,
  title={Informatics Approaches to Data Preservation and Analysis in Protein Electrostatics},
  author={Baker NA, Dowling C, Gosink L, Pulsipher T & Sansone S-A},
  pages={369A-369A},
  year = "2015"
}

COPO - Linked open infrastructure for plant data

Shaw F, Etuk A, Gonzalez-Beltran A, Rocca-Serra P, Johnson D et al. (2015), CEUR Workshop Proceedings, 1546, 181-182

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@inproceedings{copolinkedopeni-2015/1,
  title={COPO - Linked open infrastructure for plant data},
  author={Shaw F, Etuk A, Gonzalez-Beltran A, Rocca-Serra P, Johnson D et al.},
  pages={181-182},
  year = "2015"
}

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.

Salek RM, Neumann S, Schober D, Hummel J, Billiau K et al. (2015), Metabolomics : Official journal of the Metabolomic Society, 11(6), 1587-1597

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@article{coordinationofs-2015/1,
  title={COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.},
  author={Salek RM, Neumann S, Schober D, Hummel J, Billiau K et al.},
  journal={Metabolomics : Official journal of the Metabolomic Society},
  volume={11},
  pages={1587-1597},
  year = "2015"
}

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.

SEQC/MAQC-III Consortium (2014), Nature biotechnology, 32(9), 903-914

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@article{acomprehensivea-2014/9,
  title={A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium.},
  author={SEQC/MAQC-III Consortium },
  journal={Nature biotechnology},
  volume={32},
  pages={903-914},
  year = "2014"
}

Genomic standards consortium projects.

Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L et al. (2014), Standards in genomic sciences, 9(3), 599-601

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@article{genomicstandard-2014/6,
  title={Genomic standards consortium projects.},
  author={Field D, Sterk P, Kottmann R, De Smet JW, Amaral-Zettler L et al.},
  journal={Standards in genomic sciences},
  volume={9},
  pages={599-601},
  year = "2014"
}

The founding charter of the Genomic Observatories Network.

Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J et al. (2014), GigaScience, 3(1), 2

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@article{thefoundingchar-2014/3,
  title={The founding charter of the Genomic Observatories Network.},
  author={Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J et al.},
  journal={GigaScience},
  volume={3},
  pages={2},
  year = "2014"
}

A sea of standards for omics data: sink or swim?

Tenenbaum JD, Sansone S-A & Haendel M (2014), Journal of the American Medical Informatics Association : JAMIA, 21(2), 200-203

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@article{aseaofstandards-2014/3,
  title={A sea of standards for omics data: sink or swim?},
  author={Tenenbaum JD, Sansone S-A & Haendel M},
  journal={Journal of the American Medical Informatics Association : JAMIA},
  volume={21},
  pages={200-203},
  year = "2014"
}

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y et al. (2014), Journal of biomedical semantics, 5(1), 5

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@article{biohackathonser-2014/2,
  title={BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.},
  author={Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y et al.},
  journal={Journal of biomedical semantics},
  volume={5},
  pages={5},
  year = "2014"
}

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.

Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A et al. (2014), Nucleic acids research, 42(Database issue), D600-D606

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@article{ebimetagenomics-2014/1,
  title={EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.},
  author={Hunter S, Corbett M, Denise H, Fraser M, Gonzalez-Beltran A et al.},
  journal={Nucleic acids research},
  volume={42},
  pages={D600-D606},
  year = "2014"
}

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

González-Beltrán A, Neumann S, Maguire E, Sansone S-A & Rocca-Serra P (2014), BMC bioinformatics, 15 Suppl 1, S11

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@article{therisarbiocond-2014/1,
  title={The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.},
  author={González-Beltrán A, Neumann S, Maguire E, Sansone S-A & Rocca-Serra P},
  journal={BMC bioinformatics},
  volume={15 Suppl 1},
  pages={S11},
  year = "2014"
}

linkedISA: semantic representation of ISA-Tab experimental metadata.

González-Beltrán A, Maguire E, Sansone S-A & Rocca-Serra P (2014), BMC bioinformatics, 15 Suppl 14, S4

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@article{linkedisasemant-2014/1,
  title={linkedISA: semantic representation of ISA-Tab experimental metadata.},
  author={González-Beltrán A, Maguire E, Sansone S-A & Rocca-Serra P},
  journal={BMC bioinformatics},
  volume={15 Suppl 14},
  pages={S4},
  year = "2014"
}

Visual compression of workflow visualizations with automated detection of macro motifs.

Maguire E, Rocca-Serra P, Sansone S-A, Davies J & Chen M (2013), IEEE transactions on visualization and computer graphics, 19(12), 2576-2585

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@article{visualcompressi-2013/12,
  title={Visual compression of workflow visualizations with automated detection of macro motifs.},
  author={Maguire E, Rocca-Serra P, Sansone S-A, Davies J & Chen M},
  journal={IEEE transactions on visualization and computer graphics},
  volume={19},
  pages={2576-2585},
  year = "2013"
}

Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting

Soldatova LN, Sansone SA, Dumontier M & Shah NH (2013), Journal of Biomedical Semantics, 4(1)

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@article{selectedpapersf-2013/4,
  title={Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting},
  author={Soldatova LN, Sansone SA, Dumontier M & Shah NH},
  journal={Journal of Biomedical Semantics},
  volume={4},
  year = "2013"
}

OntoMaton: a bioportal powered ontology widget for Google Spreadsheets.

Maguire E, González-Beltrán A, Whetzel PL, Sansone S-A & Rocca-Serra P (2013), Bioinformatics (Oxford, England), 29(4), 525-527

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@article{ontomatonabiopo-2013/2,
  title={OntoMaton: a bioportal powered ontology widget for Google Spreadsheets.},
  author={Maguire E, González-Beltrán A, Whetzel PL, Sansone S-A & Rocca-Serra P},
  journal={Bioinformatics (Oxford, England)},
  volume={29},
  pages={525-527},
  year = "2013"
}

Standardizing data.

Baker NA, Klemm JD, Harper SL, Gaheen S, Heiskanen M et al. (2013), Nature nanotechnology, 8(2), 73-74

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@article{standardizingda-2013/2,
  title={Standardizing data.},
  author={Baker NA, Klemm JD, Harper SL, Gaheen S, Heiskanen M et al.},
  journal={Nature nanotechnology},
  volume={8},
  pages={73-74},
  year = "2013"
}

MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.

Haug K, Salek RM, Conesa P, Hastings J, de Matos P et al. (2013), Nucleic acids research, 41(Database issue), D781-D786

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@article{metabolightsano-2013/1,
  title={MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data.},
  author={Haug K, Salek RM, Conesa P, Hastings J, de Matos P et al.},
  journal={Nucleic acids research},
  volume={41},
  pages={D781-D786},
  year = "2013"
}

The MetaboLights repository: curation challenges in metabolomics.

Salek RM, Haug K, Conesa P, Hastings J, Williams M et al. (2013), Database : the journal of biological databases and curation, 2013, bat029

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@article{themetabolights-2013/1,
  title={The MetaboLights repository: curation challenges in metabolomics.},
  author={Salek RM, Haug K, Conesa P, Hastings J, Williams M et al.},
  journal={Database : the journal of biological databases and curation},
  volume={2013},
  pages={bat029},
  year = "2013"
}

The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.

Ho Sui S, Merrill E, Gehlenborg N, Haseley P, Sytchev I et al. (2013), AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2013, 70

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@article{thestemcellcomm-2013/1,
  title={The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.},
  author={Ho Sui S, Merrill E, Gehlenborg N, Haseley P, Sytchev I et al.},
  journal={AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science},
  volume={2013},
  pages={70},
  year = "2013"
}

MetaboLights: towards a new COSMOS of metabolomics data management.

Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M et al. (2012), Metabolomics : Official journal of the Metabolomic Society, 8(5), 757-760

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@article{metabolightstow-2012/10,
  title={MetaboLights: towards a new COSMOS of metabolomics data management.},
  author={Steinbeck C, Conesa P, Haug K, Mahendraker T, Williams M et al.},
  journal={Metabolomics : Official journal of the Metabolomic Society},
  volume={8},
  pages={757-760},
  year = "2012"
}

Taxonomy-Based glyph design-With a case study on visualizing workflows of biological experiments

Maguire E, Rocca-Serra P, Sansone SA, Davies J & Chen M (2012), IEEE Transactions on Visualization and Computer Graphics, 18(12), 2603-2612

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@article{taxonomybasedgl-2012/10,
  title={Taxonomy-Based glyph design-With a case study on visualizing workflows of biological experiments},
  author={Maguire E, Rocca-Serra P, Sansone SA, Davies J & Chen M},
  journal={IEEE Transactions on Visualization and Computer Graphics},
  volume={18},
  pages={2603-2612},
  year = "2012"
}

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness.

Liolios K, Schriml L, Hirschman L, Pagani I, Nosrat B et al. (2012), Standards in genomic sciences, 6(3), 438-447

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@article{themetadatacove-2012/7,
  title={The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness.},
  author={Liolios K, Schriml L, Hirschman L, Pagani I, Nosrat B et al.},
  journal={Standards in genomic sciences},
  volume={6},
  pages={438-447},
  year = "2012"
}

On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities.

Sansone S-A & Rocca-Serra P (2012), GigaScience, 1(1), 10

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@article{ontheevolvingpo-2012/7,
  title={On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities.},
  author={Sansone S-A & Rocca-Serra P},
  journal={GigaScience},
  volume={1},
  pages={10},
  year = "2012"
}

graph2tab, a library to convert experimental workflow graphs into tabular formats.

Brandizi M, Kurbatova N, Sarkans U & Rocca-Serra P (2012), Bioinformatics (Oxford, England), 28(12), 1665-1667

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@article{graphtabalibrar-2012/6,
  title={graph2tab, a library to convert experimental workflow graphs into tabular formats.},
  author={Brandizi M, Kurbatova N, Sarkans U & Rocca-Serra P},
  journal={Bioinformatics (Oxford, England)},
  volume={28},
  pages={1665-1667},
  year = "2012"
}

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.

Gilbert JA, Bao Y, Wang H, Sansone S-A, Edmunds SC et al. (2012), Standards in genomic sciences, 6(2), 276-286

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@article{reportofthethge-2012/5,
  title={Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.},
  author={Gilbert JA, Bao Y, Wang H, Sansone S-A, Edmunds SC et al.},
  journal={Standards in genomic sciences},
  volume={6},
  pages={276-286},
  year = "2012"
}

Conceptualizing a Genomics Software Institute (GSI)

Gilbert JA, Catlett C, Desai N, Knight R, White O et al. (2012), Standards in Genomic Sciences, 6(1), 116-124

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@article{conceptualizing-2012/4,
  title={Conceptualizing a Genomics Software Institute (GSI)},
  author={Gilbert JA, Catlett C, Desai N, Knight R, White O et al.},
  journal={Standards in Genomic Sciences},
  volume={6},
  pages={116-124},
  year = "2012"
}

Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting

Soldatova LN, Sansone SA, Dumontier M & Shah NH (2012), Journal of Biomedical Semantics, 3(1)

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@article{selectedpapersf-2012/4,
  title={Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting},
  author={Soldatova LN, Sansone SA, Dumontier M & Shah NH},
  journal={Journal of Biomedical Semantics},
  volume={3},
  year = "2012"
}

Conceptualizing a Genomics Software Institute (GSI).

Gilbert JA, Catlett C, Desai N, Knight R, White O et al. (2012), Standards in genomic sciences, 6(1), 136-144

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@article{conceptualizing-2012/3,
  title={Conceptualizing a Genomics Software Institute (GSI).},
  author={Gilbert JA, Catlett C, Desai N, Knight R, White O et al.},
  journal={Standards in genomic sciences},
  volume={6},
  pages={136-144},
  year = "2012"
}

Toward interoperable bioscience data

Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C et al. (2012), Nature Genetics, 44(2), 121-126

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@article{towardinteroper-2012/2,
  title={Toward interoperable bioscience data},
  author={Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C et al.},
  journal={Nature Genetics},
  volume={44},
  pages={121-126},
  year = "2012"
}

Toward interoperable bioscience data.

Sansone S-A, Rocca-Serra P, Field D, Maguire E, Taylor C et al. (2012), Nat Genet, 44(2), 121-126

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@article{towardinteroper-2012/1,
  title={Toward interoperable bioscience data.},
  author={Sansone S-A, Rocca-Serra P, Field D, Maguire E, Taylor C et al.},
  journal={Nat Genet},
  volume={44},
  pages={121-126},
  year = "2012"
}

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.

Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA et al. (2012), Database : the journal of biological databases and curation, 2012, bas036

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@article{recentadvancesi-2012/1,
  title={Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.},
  author={Gaudet P, Arighi C, Bastian F, Bateman A, Blake JA et al.},
  journal={Database : the journal of biological databases and curation},
  volume={2012},
  pages={bas036},
  year = "2012"
}

The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Ho Sui SJ, Begley K, Reilly D, Chapman B, McGovern R et al. (2012), Nucleic acids research, 40(Database issue), D984-D991

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@article{thestemcelldisc-2012/1,
  title={The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.},
  author={Ho Sui SJ, Begley K, Reilly D, Chapman B, McGovern R et al.},
  journal={Nucleic acids research},
  volume={40},
  pages={D984-D991},
  year = "2012"
}

The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness

Liolios K, Schriml L, Hirschman L, Pagani I, Nosrat B et al. (2012), STANDARDS IN GENOMIC SCIENCES, 6(3), 444-453

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@article{themetadatacove-2012/,
  title={The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness},
  author={Liolios K, Schriml L, Hirschman L, Pagani I, Nosrat B et al.},
  journal={STANDARDS IN GENOMIC SCIENCES},
  volume={6},
  pages={444-453},
  year = "2012"
}

Investigation-Study-Assay, a toolkit for standardizing data capture and sharing

Rocca-Serra P, Maguire E, Taylor C, Field D, Wittenberger T et al. (2012)(16), 173-188

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@misc{investigationst-2012/,
  title={Investigation-Study-Assay, a toolkit for standardizing data capture and sharing},
  author={Rocca-Serra P, Maguire E, Taylor C, Field D, Wittenberger T et al.},
  year = "2012"
}

Empowering industrial research with shared biomedical vocabularies.

Harland L, Larminie C, Sansone S-A, Popa S, Marshall MS et al. (2011), Drug discovery today, 16(21-22), 940-947

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@article{empoweringindus-2011/11,
  title={Empowering industrial research with shared biomedical vocabularies.},
  author={Harland L, Larminie C, Sansone S-A, Popa S, Marshall MS et al.},
  journal={Drug discovery today},
  volume={16},
  pages={940-947},
  year = "2011"
}

The genomic standards consortium: bringing standards to life for microbial ecology.

Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I et al. (2011), The ISME journal, 5(10), 1565-1567

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@article{thegenomicstand-2011/10,
  title={The genomic standards consortium: bringing standards to life for microbial ecology.},
  author={Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I et al.},
  journal={The ISME journal},
  volume={5},
  pages={1565-1567},
  year = "2011"
}

The genomic standards consortium: Bringing standards to life for microbial ecology

Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I et al. (2011), ISME Journal, 5(10), 1565-1567

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@article{thegenomicstand-2011/10,
  title={The genomic standards consortium: Bringing standards to life for microbial ecology},
  author={Yilmaz P, Gilbert JA, Knight R, Amaral-Zettler L, Karsch-Mizrachi I et al.},
  journal={ISME Journal},
  volume={5},
  pages={1565-1567},
  year = "2011"
}

The Genomic Standards Consortium.

Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P et al. (2011), PLoS biology, 9(6), e1001088

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@article{thegenomicstand-2011/6,
  title={The Genomic Standards Consortium.},
  author={Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P et al.},
  journal={PLoS biology},
  volume={9},
  pages={e1001088},
  year = "2011"
}

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR et al. (2011), Nature biotechnology, 29(5), 415-420

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@article{minimuminformat-2011/5,
  title={Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.},
  author={Yilmaz P, Kottmann R, Field D, Knight R, Cole JR et al.},
  journal={Nature biotechnology},
  volume={29},
  pages={415-420},
  year = "2011"
}

Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting

Soldatova LN, Sansone SA, Stephens SM & Shah NH (2011), Journal of Biomedical Semantics, 2(2)

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@article{selectedpapersf-2011/5,
  title={Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting},
  author={Soldatova LN, Sansone SA, Stephens SM & Shah NH},
  journal={Journal of Biomedical Semantics},
  volume={2},
  year = "2011"
}

Data standards

Field D, Sansone SA & Taylor CF (2011), Scientist, 25(4), 14

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@article{datastandards-2011/4,
  title={Data standards},
  author={Field D, Sansone SA & Taylor CF},
  journal={Scientist},
  volume={25},
  pages={14},
  year = "2011"
}

Data Standards

Field D, Sansone S-A & Taylor CF (2011), SCIENTIST, 25(4), 15-15

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@article{datastandards-2011/4,
  title={Data Standards},
  author={Field D, Sansone S-A & Taylor CF},
  journal={SCIENTIST},
  volume={25},
  pages={15-15},
  year = "2011"
}

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone S-A, Taylor C et al. (2011), Database : the journal of biological databases and curation, 2011, baq027

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@article{towardsbiodbcor-2011/1,
  title={Towards BioDBcore: a community-defined information specification for biological databases.},
  author={Gaudet P, Bairoch A, Field D, Sansone S-A, Taylor C et al.},
  journal={Database : the journal of biological databases and curation},
  volume={2011},
  pages={baq027},
  year = "2011"
}

Towards BioDBcore: a community-defined information specification for biological databases.

Gaudet P, Bairoch A, Field D, Sansone S-A, Taylor C et al. (2011), Nucleic acids research, 39(Database issue), D7-10

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@article{towardsbiodbcor-2011/1,
  title={Towards BioDBcore: a community-defined information specification for biological databases.},
  author={Gaudet P, Bairoch A, Field D, Sansone S-A, Taylor C et al.},
  journal={Nucleic acids research},
  volume={39},
  pages={D7-10},
  year = "2011"
}

Data standards for Omics data: the basis of data sharing and reuse.

Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J et al. (2011), Methods in molecular biology (Clifton, N.J.), 719, 31-69

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@article{datastandardsfo-2011/1,
  title={Data standards for Omics data: the basis of data sharing and reuse.},
  author={Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J et al.},
  journal={Methods in molecular biology (Clifton, N.J.)},
  volume={719},
  pages={31-69},
  year = "2011"
}

Overcoming the ontology enrichment bottleneck with Quick Term Templates

Rocca-Serra P, Ruttenberg A, O'Connor MJ, Whetzel PL, Schober D et al. (2011), APPLIED ONTOLOGY, 6(1), 13-22

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@article{overcomingtheon-2011/,
  title={Overcoming the ontology enrichment bottleneck with Quick Term Templates},
  author={Rocca-Serra P, Ruttenberg A, O'Connor MJ, Whetzel PL, Schober D et al.},
  journal={APPLIED ONTOLOGY},
  volume={6},
  pages={13-22},
  year = "2011"
}

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.

Glass E, Meyer F, Gilbert JA, Field D, Hunter S et al. (2010), Standards in genomic sciences, 3(3), 225-231

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@article{meetingreportfr-2010/12,
  title={Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.},
  author={Glass E, Meyer F, Gilbert JA, Field D, Hunter S et al.},
  journal={Standards in genomic sciences},
  volume={3},
  pages={225-231},
  year = "2010"
}

Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.

Kettner C, Field D, Sansone S-A, Taylor C, Aerts J et al. (2010), Standards in genomic sciences, 3(3), 259-266

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@article{meetingreportfr-2010/12,
  title={Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop.},
  author={Kettner C, Field D, Sansone S-A, Taylor C, Aerts J et al.},
  journal={Standards in genomic sciences},
  volume={3},
  pages={259-266},
  year = "2010"
}

Meeting Report: BioSharing at ISMB 2010.

Field D, Sansone S, Delong EF, Sterk P, Friedberg I et al. (2010), Standards in genomic sciences, 3(3), 254-258

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@article{meetingreportbi-2010/12,
  title={Meeting Report: BioSharing at ISMB 2010.},
  author={Field D, Sansone S, Delong EF, Sterk P, Friedberg I et al.},
  journal={Standards in genomic sciences},
  volume={3},
  pages={254-258},
  year = "2010"
}

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.

Field D, Sansone S, Delong EF, Sterk P, Friedberg I et al. (2010), Standards in genomic sciences, 3(3), 232-234

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@article{meetingreportme-2010/12,
  title={Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.},
  author={Field D, Sansone S, Delong EF, Sterk P, Friedberg I et al.},
  journal={Standards in genomic sciences},
  volume={3},
  pages={232-234},
  year = "2010"
}

Ontology representation and ANOVA analysis of vaccine protection investigation

He Y, Xiang Z, Todd T, Courtot M, Brinkman R et al. (2010), CEUR Workshop Proceedings, 754

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@inproceedings{ontologyreprese-2010/12,
  title={Ontology representation and ANOVA analysis of vaccine protection investigation},
  author={He Y, Xiang Z, Todd T, Courtot M, Brinkman R et al.},
  year = "2010"
}

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor C et al. (2010), Bioinformatics (Oxford, England), 26(18), 2354-2356

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@article{isasoftwaresuit-2010/9,
  title={ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.},
  author={Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor C et al.},
  journal={Bioinformatics (Oxford, England)},
  volume={26},
  pages={2354-2356},
  year = "2010"
}

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.

Hirschman L, Sterk P, Field D, Wooley J, Cochrane G et al. (2010), Standards in genomic sciences, 2(3), 357-360

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@article{meetingreportme-2010/6,
  title={Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.},
  author={Hirschman L, Sterk P, Field D, Wooley J, Cochrane G et al.},
  journal={Standards in genomic sciences},
  volume={2},
  pages={357-360},
  year = "2010"
}

Modeling biomedical experimental processes with OBI

Brinkman RR, Courtot M, Derom D, Fostel JM, He Y et al. (2010), Journal of Biomedical Semantics, 1(1)

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@inproceedings{modelingbiomedi-2010/6,
  title={Modeling biomedical experimental processes with OBI},
  author={Brinkman RR, Courtot M, Derom D, Fostel JM, He Y et al.},
  year = "2010"
}

Modeling biomedical experimental processes with OBI.

Brinkman RR, Courtot M, Derom D, Fostel JM, He Y et al. (2010), Journal of biomedical semantics, 1 Suppl 1, S7

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@article{modelingbiomedi-2010/6,
  title={Modeling biomedical experimental processes with OBI.},
  author={Brinkman RR, Courtot M, Derom D, Fostel JM, He Y et al.},
  journal={Journal of biomedical semantics},
  volume={1 Suppl 1},
  pages={S7},
  year = "2010"
}

Selected papers from the 12<sup>th</sup> annual Bio-Ontologies meeting

Soldatova LN, Lord P, Sansone SA, Stephens SM & Shah NH (2010), Journal of Biomedical Semantics, 1(1)

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@article{selectedpapersf-2010/6,
  title={Selected papers from the 12<sup>th</sup> annual Bio-Ontologies meeting},
  author={Soldatova LN, Lord P, Sansone SA, Stephens SM & Shah NH},
  journal={Journal of Biomedical Semantics},
  volume={1},
  year = "2010"
}

Megascience. 'Omics data sharing.

Field D, Sansone S-A, Collis A, Booth T, Dukes P et al. (2009), Science, 326(5950), 234-236

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@article{megascienceomic-2009/10,
  title={Megascience. 'Omics data sharing.},
  author={Field D, Sansone S-A, Collis A, Booth T, Dukes P et al.},
  journal={Science},
  volume={326},
  pages={234-236},
  year = "2009"
}

Reporting Standards for Omics Data: Instruction for Use

Sansone S-A & Rocca-Serra P (2009), MOLECULAR & CELLULAR TOXICOLOGY, 5(3), 46-46

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@inproceedings{reportingstanda-2009/9,
  title={Reporting Standards for Omics Data: Instruction for Use},
  author={Sansone S-A & Rocca-Serra P},
  pages={46-46},
  year = "2009"
}

ISA Infrastructure - Assisting Users to Report Experimental Metadata

Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor CF et al. (2009), MOLECULAR & CELLULAR TOXICOLOGY, 5(3), 40-40

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@inproceedings{isainfrastructu-2009/9,
  title={ISA Infrastructure - Assisting Users to Report Experimental Metadata},
  author={Rocca-Serra P, Brandizi M, Maguire E, Sklyar N, Taylor CF et al.},
  pages={40-40},
  year = "2009"
}

Survey-based naming conventions for use in OBO Foundry ontology development.

Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J et al. (2009), BMC bioinformatics, 10, 125

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@article{surveybasednami-2009/4,
  title={Survey-based naming conventions for use in OBO Foundry ontology development.},
  author={Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J et al.},
  journal={BMC bioinformatics},
  volume={10},
  pages={125},
  year = "2009"
}

Towards interoperable reporting standards for omics data: hopes and hurdles.

Sansone S-A, Rocca-Serra P, Field D, Taylor CF, Tong W et al. (2009), Summit on translational bioinformatics, 2009, 112-115

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@article{towardsinterope-2009/3,
  title={Towards interoperable reporting standards for omics data: hopes and hurdles.},
  author={Sansone S-A, Rocca-Serra P, Field D, Taylor CF, Tong W et al.},
  journal={Summit on translational bioinformatics},
  volume={2009},
  pages={112-115},
  year = "2009"
}

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.

Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M et al. (2009), Nucleic acids research, 37(Database issue), D868-D872

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@article{arrayexpressupd-2009/1,
  title={ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.},
  author={Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M et al.},
  journal={Nucleic acids research},
  volume={37},
  pages={D868-D872},
  year = "2009"
}

The carcinoGENOMICS project: critical selection of model compounds for the development of omics-based in vitro carcinogenicity screening assays.

Vinken M, Doktorova T, Ellinger-Ziegelbauer H, Ahr H-J, Lock E et al. (2008), Mutation research, 659(3), 202-210

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@article{thecarcinogenom-2008/9,
  title={The carcinoGENOMICS project: critical selection of model compounds for the development of omics-based in vitro carcinogenicity screening assays.},
  author={Vinken M, Doktorova T, Ellinger-Ziegelbauer H, Ahr H-J, Lock E et al.},
  journal={Mutation research},
  volume={659},
  pages={202-210},
  year = "2008"
}

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Taylor CF, Field D, Sansone S-A, Aerts J, Apweiler R et al. (2008), Nat Biotechnol, 26(8), 889-896

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@article{promotingcohere-2008/8,
  title={Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.},
  author={Taylor CF, Field D, Sansone S-A, Aerts J, Apweiler R et al.},
  journal={Nat Biotechnol},
  volume={26},
  pages={889-896},
  year = "2008"
}

Meeting report: The fifth Genomic Standards Consortium (GSC) workshop

Field D, Garrity GM, Sansone SA, Sterk P, Gray T et al. (2008), OMICS A Journal of Integrative Biology, 12(2), 109-113

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@inproceedings{meetingreportth-2008/6,
  title={Meeting report: The fifth Genomic Standards Consortium (GSC) workshop},
  author={Field D, Garrity GM, Sansone SA, Sterk P, Gray T et al.},
  pages={109-113},
  year = "2008"
}

Foreword to the special issue on the Fifth Genomic Standards consortium workshop.

Field D, Sansone S-A & Garrity GM (2008), Omics : a journal of integrative biology, 12(2), 99

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@article{forewordtothesp-2008/6,
  title={Foreword to the special issue on the Fifth Genomic Standards consortium workshop.},
  author={Field D, Sansone S-A & Garrity GM},
  journal={Omics : a journal of integrative biology},
  volume={12},
  pages={99},
  year = "2008"
}

The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?".

Sansone S-A, Rocca-Serra P, Brandizi M, Brazma A, Field D et al. (2008), Omics : a journal of integrative biology, 12(2), 143-149

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@inproceedings{thefirstrsbiisa-2008/6,
  title={The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?".},
  author={Sansone S-A, Rocca-Serra P, Brandizi M, Brazma A, Field D et al.},
  pages={143-149},
  year = "2008"
}

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.

Field D, Garrity GM, Sansone S-A, Sterk P, Gray T et al. (2008), Omics : a journal of integrative biology, 12(2), 109-113

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@article{meetingreportth-2008/6,
  title={Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.},
  author={Field D, Garrity GM, Sansone S-A, Sterk P, Gray T et al.},
  journal={Omics : a journal of integrative biology},
  volume={12},
  pages={109-113},
  year = "2008"
}

Toward a standards-compliant genomic and metagenomic publication record.

Garrity GM, Field D, Kyrpides N, Hirschman L, Sansone S-A et al. (2008), Omics : a journal of integrative biology, 12(2), 157-160

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@inproceedings{towardastandard-2008/6,
  title={Toward a standards-compliant genomic and metagenomic publication record.},
  author={Garrity GM, Field D, Kyrpides N, Hirschman L, Sansone S-A et al.},
  pages={157-160},
  year = "2008"
}

The minimum information about a genome sequence (MIGS) specification

Field D, Garrity G, Gray T, Morrison N, Selengut J et al. (2008), NATURE BIOTECHNOLOGY, 26(5), 541-547

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@article{theminimuminfor-2008/5,
  title={The minimum information about a genome sequence (MIGS) specification},
  author={Field D, Garrity G, Gray T, Morrison N, Selengut J et al.},
  journal={NATURE BIOTECHNOLOGY},
  volume={26},
  pages={541-547},
  year = "2008"
}

The minimum information about a genome sequence (MIGS) specification.

Field D, Garrity G, Gray T, Morrison N, Selengut J et al. (2008), Nature biotechnology, 26(5), 541-547

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@article{theminimuminfor-2008/5,
  title={The minimum information about a genome sequence (MIGS) specification.},
  author={Field D, Garrity G, Gray T, Morrison N, Selengut J et al.},
  journal={Nature biotechnology},
  volume={26},
  pages={541-547},
  year = "2008"
}

Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.

Spasić I, Schober D, Sansone S-A, Rebholz-Schuhmann D, Kell DB et al. (2008), BMC bioinformatics, 9 Suppl 5, S5

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@inproceedings{facilitatingthe-2008/4,
  title={Facilitating the development of controlled vocabularies for metabolomics technologies with text mining.},
  author={Spasić I, Schober D, Sansone S-A, Rebholz-Schuhmann D, Kell DB et al.},
  pages={S5},
  year = "2008"
}

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A et al. (2008), Nature biotechnology, 26(3), 305-312

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@article{minimuminformat-2008/3,
  title={Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).},
  author={Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A et al.},
  journal={Nature biotechnology},
  volume={26},
  pages={305-312},
  year = "2008"
}

Databases and Standardisation of Reporting Methods for Metabolic Studies

Sansone SA, Waters MD & Viant MR (2007), 227-239

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@misc{databasesandsta-2007/12,
  title={Databases and Standardisation of Reporting Methods for Metabolic Studies},
  author={Sansone SA, Waters MD & Viant MR},
  year = "2007"
}

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Smith B, Ashburner M, Rosse C, Bard J, Bug W et al. (2007), Nature biotechnology, 25(11), 1251-1255

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@article{theobofoundryco-2007/11,
  title={The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.},
  author={Smith B, Ashburner M, Rosse C, Bard J, Bug W et al.},
  journal={Nature biotechnology},
  volume={25},
  pages={1251-1255},
  year = "2007"
}

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.

Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA et al. (2007), Nature biotechnology, 25(10), 1127-1133

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@article{thefunctionalge-2007/10,
  title={The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.},
  author={Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA et al.},
  journal={Nature biotechnology},
  volume={25},
  pages={1127-1133},
  year = "2007"
}

Metabolomics standards initiative: ontology working group work in progress

Sansone S-A, Schober D, Atherton HJ, Fiehn O, Jenkins H et al. (2007), METABOLOMICS, 3(3), 249-256

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@article{metabolomicssta-2007/9,
  title={Metabolomics standards initiative: ontology working group work in progress},
  author={Sansone S-A, Schober D, Atherton HJ, Fiehn O, Jenkins H et al.},
  journal={METABOLOMICS},
  volume={3},
  pages={249-256},
  year = "2007"
}

The metabolomics standards initiative (MSI)

Fiehn O, Robertson D, Griffin J, van der Werf M, Nikolau B et al. (2007), METABOLOMICS, 3(3), 175-178

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@article{themetabolomics-2007/9,
  title={The metabolomics standards initiative (MSI)},
  author={Fiehn O, Robertson D, Griffin J, van der Werf M, Nikolau B et al.},
  journal={METABOLOMICS},
  volume={3},
  pages={175-178},
  year = "2007"
}

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

Morrison N, Bearden D, Bundy JG, Collette T, Currie F et al. (2007), METABOLOMICS, 3(3), 203-210

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@article{standardreporti-2007/9,
  title={Standard reporting requirements for biological samples in metabolomics experiments: environmental context},
  author={Morrison N, Bearden D, Bundy JG, Collette T, Currie F et al.},
  journal={METABOLOMICS},
  volume={3},
  pages={203-210},
  year = "2007"
}

The metabolomics standards initiative.

MSI Board Members , Sansone S-A, Fan T, Goodacre R, Griffin JL et al. (2007), Nature biotechnology, 25(8), 846-848

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@article{themetabolomics-2007/8,
  title={The metabolomics standards initiative.},
  author={MSI Board Members , Sansone S-A, Fan T, Goodacre R, Griffin JL et al.},
  journal={Nature biotechnology},
  volume={25},
  pages={846-848},
  year = "2007"
}

ArrayExpress: A Public Repository for Microarray Data

Parkinson H, Sansone SA, Sarkans U, Rocca-Serra P & Brazma A (2006), 4, 95-102

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@misc{arrayexpressapu-2006/12,
  title={ArrayExpress: A Public Repository for Microarray Data},
  author={Parkinson H, Sansone SA, Sarkans U, Rocca-Serra P & Brazma A},
  year = "2006"
}

A special issue on data standards

Field D & Sansone S-A (2006), OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY, 10(2), 84-93

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@article{aspecialissueon-2006/6,
  title={A special issue on data standards},
  author={Field D & Sansone S-A},
  journal={OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY},
  volume={10},
  pages={84-93},
  year = "2006"
}

The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case.

Castro AG, Rocca-Serra P, Stevens R, Taylor C, Nashar K et al. (2006), BMC bioinformatics, 7, 267

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@article{theuseofconcept-2006/5,
  title={The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case.},
  author={Castro AG, Rocca-Serra P, Stevens R, Taylor C, Nashar K et al.},
  journal={BMC bioinformatics},
  volume={7},
  pages={267},
  year = "2006"
}

The MGED Ontology: a resource for semantics-based description of microarray experiments.

Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J et al. (2006), Bioinformatics (Oxford, England), 22(7), 866-873

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@article{themgedontology-2006/4,
  title={The MGED Ontology: a resource for semantics-based description of microarray experiments.},
  author={Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J et al.},
  journal={Bioinformatics (Oxford, England)},
  volume={22},
  pages={866-873},
  year = "2006"
}

Meeting report: Validation of toxicogenomics-based test systems: ECVAM-ICCVAM/NICEATM considerations for regulatory use.

Corvi R, Ahr H-J, Albertini S, Blakey DH, Clerici L et al. (2006), Environmental health perspectives, 114(3), 420-429

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@article{meetingreportva-2006/3,
  title={Meeting report: Validation of toxicogenomics-based test systems: ECVAM-ICCVAM/NICEATM considerations for regulatory use.},
  author={Corvi R, Ahr H-J, Albertini S, Blakey DH, Clerici L et al.},
  journal={Environmental health perspectives},
  volume={114},
  pages={420-429},
  year = "2006"
}

Wrestling with SUMO and bio-ontologies.

Stoeckert C, Ball C, Brazma A, Brinkman R, Causton H et al. (2006), Nature biotechnology, 24(1), 21-22

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@article{wrestlingwithsu-2006/1,
  title={Wrestling with SUMO and bio-ontologies.},
  author={Stoeckert C, Ball C, Brazma A, Brinkman R, Causton H et al.},
  journal={Nature biotechnology},
  volume={24},
  pages={21-22},
  year = "2006"
}

Wrestling with SUMO and bio-ontologies.

Musen MA, Lewis S & Smith B (2006), Nature biotechnology, 24(1), 21

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@article{wrestlingwithsu-2006/1,
  title={Wrestling with SUMO and bio-ontologies.},
  author={Musen MA, Lewis S & Smith B},
  journal={Nature biotechnology},
  volume={24},
  pages={21},
  year = "2006"
}

Annotation of environmental OMICS data: application to the transcriptomics domain.

Morrison N, Wood AJ, Hancock D, Shah S, Hakes L et al. (2006), Omics : a journal of integrative biology, 10(2), 172-178

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@article{annotationofenv-2006/1,
  title={Annotation of environmental OMICS data: application to the transcriptomics domain.},
  author={Morrison N, Wood AJ, Hancock D, Shah S, Hakes L et al.},
  journal={Omics : a journal of integrative biology},
  volume={10},
  pages={172-178},
  year = "2006"
}

Development of FuGO: an ontology for functional genomics investigations.

Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D et al. (2006), Omics : a journal of integrative biology, 10(2), 199-204

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@article{developmentoffu-2006/1,
  title={Development of FuGO: an ontology for functional genomics investigations.},
  author={Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D et al.},
  journal={Omics : a journal of integrative biology},
  volume={10},
  pages={199-204},
  year = "2006"
}

A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group.

Sansone S-A, Rocca-Serra P, Tong W, Fostel J, Morrison N et al. (2006), Omics : a journal of integrative biology, 10(2), 164-171

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@article{astrategycapita-2006/1,
  title={A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group.},
  author={Sansone S-A, Rocca-Serra P, Tong W, Fostel J, Morrison N et al.},
  journal={Omics : a journal of integrative biology},
  volume={10},
  pages={164-171},
  year = "2006"
}

Establishing reporting standards for metabolomic and metabonomic studies: a call for participation.

Fiehn O, Kristal B, van Ommen B, Sumner LW, Sansone S-A et al. (2006), Omics : a journal of integrative biology, 10(2), 158-163

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@article{establishingrep-2006/1,
  title={Establishing reporting standards for metabolomic and metabonomic studies: a call for participation.},
  author={Fiehn O, Kristal B, van Ommen B, Sumner LW, Sansone S-A et al.},
  journal={Omics : a journal of integrative biology},
  volume={10},
  pages={158-163},
  year = "2006"
}

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE et al. (2006), Omics : a journal of integrative biology, 10(2), 205-208

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@article{developmentofth-2006/1,
  title={Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).},
  author={Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE et al.},
  journal={Omics : a journal of integrative biology},
  volume={10},
  pages={205-208},
  year = "2006"
}

Chemical effects in biological systems--data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes, and 'omics data.

Fostel J, Choi D, Zwickl C, Morrison N, Rashid A et al. (2005), Toxicological sciences : an official journal of the Society of Toxicology, 88(2), 585-601

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@article{chemicaleffects-2005/12,
  title={Chemical effects in biological systems--data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes, and 'omics data.},
  author={Fostel J, Choi D, Zwickl C, Morrison N, Rashid A et al.},
  journal={Toxicological sciences : an official journal of the Society of Toxicology},
  volume={88},
  pages={585-601},
  year = "2005"
}

Summary recommendations for standardization and reporting of metabolic analyses.

Lindon JC, Nicholson JK, Holmes E, Keun HC, Craig A et al. (2005), Nature biotechnology, 23(7), 833-838

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@article{summaryrecommen-2005/7,
  title={Summary recommendations for standardization and reporting of metabolic analyses.},
  author={Lindon JC, Nicholson JK, Holmes E, Keun HC, Craig A et al.},
  journal={Nature biotechnology},
  volume={23},
  pages={833-838},
  year = "2005"
}

The ArrayExpress gene expression database: a software engineering and implementation perspective.

Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A et al. (2005), Bioinformatics (Oxford, England), 21(8), 1495-1501

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@article{thearrayexpress-2005/4,
  title={The ArrayExpress gene expression database: a software engineering and implementation perspective.},
  author={Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A et al.},
  journal={Bioinformatics (Oxford, England)},
  volume={21},
  pages={1495-1501},
  year = "2005"
}

Defining best practice for microarray analyses in nutrigenomic studies.

Garosi P, De Filippo C, van Erk M, Rocca-Serra P, Sansone S-A et al. (2005), The British journal of nutrition, 93(4), 425-432

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@article{definingbestpra-2005/4,
  title={Defining best practice for microarray analyses in nutrigenomic studies.},
  author={Garosi P, De Filippo C, van Erk M, Rocca-Serra P, Sansone S-A et al.},
  journal={The British journal of nutrition},
  volume={93},
  pages={425-432},
  year = "2005"
}

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S et al. (2005), Nucleic acids research, 33(Database issue), D553-D555

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@article{arrayexpressapu-2005/1,
  title={ArrayExpress--a public repository for microarray gene expression data at the EBI.},
  author={Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S et al.},
  journal={Nucleic acids research},
  volume={33},
  pages={D553-D555},
  year = "2005"
}

Submission of microarray data to public repositories.

Ball CA, Brazma A, Causton H, Chervitz S, Edgar R et al. (2004), PLoS biology, 2(9), E317

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@article{submissionofmic-2004/9,
  title={Submission of microarray data to public repositories.},
  author={Ball CA, Brazma A, Causton H, Chervitz S, Edgar R et al.},
  journal={PLoS biology},
  volume={2},
  pages={E317},
  year = "2004"
}

Standards for microarray data: an open letter.

Ball C, Brazma A, Causton H, Chervitz S, Edgar R et al. (2004), Environmental health perspectives, 112(12), A666-A667

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@article{standardsformic-2004/8,
  title={Standards for microarray data: an open letter.},
  author={Ball C, Brazma A, Causton H, Chervitz S, Edgar R et al.},
  journal={Environmental health perspectives},
  volume={112},
  pages={A666-A667},
  year = "2004"
}

Meeting report: EU-US Workshop on Molecular Signatures of DNA Damage-Induced Stress Responses. Cortona, Italy, 26-30 September 2003.

Sander M, Desaintes C, Pelroy R, Ferro W, Van Houten B et al. (2004), Mutation research, 550(1-2), 145-181

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@inproceedings{meetingreporteu-2004/6,
  title={Meeting report: EU-US Workshop on Molecular Signatures of DNA Damage-Induced Stress Responses. Cortona, Italy, 26-30 September 2003.},
  author={Sander M, Desaintes C, Pelroy R, Ferro W, Van Houten B et al.},
  pages={145-181},
  year = "2004"
}

Database development in toxicogenomics: Issues and efforts

Mattes WB, Pettit SD, Sansone SA, Bushel PR & Waters MD (2004), ENVIRONMENTAL HEALTH PERSPECTIVES, 112(4), 495-505

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@article{databasedevelop-2004/3,
  title={Database development in toxicogenomics: Issues and efforts},
  author={Mattes WB, Pettit SD, Sansone SA, Bushel PR & Waters MD},
  journal={ENVIRONMENTAL HEALTH PERSPECTIVES},
  volume={112},
  pages={495-505},
  year = "2004"
}

Database development in toxicogenomics: issues and efforts.

Mattes WB, Pettit SD, Sansone S-A, Bushel PR & Waters MD (2004), Environmental health perspectives, 112(4), 495-505

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@article{databasedevelop-2004/3,
  title={Database development in toxicogenomics: issues and efforts.},
  author={Mattes WB, Pettit SD, Sansone S-A, Bushel PR & Waters MD},
  journal={Environmental health perspectives},
  volume={112},
  pages={495-505},
  year = "2004"
}

Standardization Initiatives in the (eco)toxicogenomics domain: a review.

Sansone SA, Morrison N, Rocca-Serra P & Fostel J (2004), Comparative and functional genomics, 5(8), 633-641

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@article{standardization-2004/1,
  title={Standardization Initiatives in the (eco)toxicogenomics domain: a review.},
  author={Sansone SA, Morrison N, Rocca-Serra P & Fostel J},
  journal={Comparative and functional genomics},
  volume={5},
  pages={633-641},
  year = "2004"
}

ArrayExpress: a public database of gene expression data at EBI.

Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M et al. (2003), Comptes rendus biologies, 326(10-11), 1075-1078

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@article{arrayexpressapu-2003/10,
  title={ArrayExpress: a public database of gene expression data at EBI.},
  author={Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M et al.},
  journal={Comptes rendus biologies},
  volume={326},
  pages={1075-1078},
  year = "2003"
}

ArrayExpress--a public repository for microarray gene expression data at the EBI.

Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J et al. (2003), Nucleic acids research, 31(1), 68-71

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@article{arrayexpressapu-2003/1,
  title={ArrayExpress--a public repository for microarray gene expression data at the EBI.},
  author={Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J et al.},
  journal={Nucleic acids research},
  volume={31},
  pages={68-71},
  year = "2003"
}

ArrayExpress: a public database of gene expression data at EBI

Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M et al. (2003), COMPTES RENDUS BIOLOGIES, 326(10-11), 1075-1078

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@article{arrayexpressapu-2003/,
  title={ArrayExpress: a public database of gene expression data at EBI},
  author={Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M et al.},
  journal={COMPTES RENDUS BIOLOGIES},
  volume={326},
  pages={1075-1078},
  year = "2003"
}

The role of two periplasmic copper- and zinc-cofactored superoxide dismutases in the virulence of Salmonella choleraesuis.

Sansone A, Watson PR, Wallis TS, Langford PR & Kroll JS (2002), Microbiology (Reading, England), 148(Pt 3), 719-726

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@article{theroleoftwoper-2002/3,
  title={The role of two periplasmic copper- and zinc-cofactored superoxide dismutases in the virulence of Salmonella choleraesuis.},
  author={Sansone A, Watson PR, Wallis TS, Langford PR & Kroll JS},
  journal={Microbiology (Reading, England)},
  volume={148},
  pages={719-726},
  year = "2002"
}

Bacterial superoxide dismutase and virulence.

Langford PR, Sansone A, Valenti P, Battistoni A & Kroll JS (2002), Methods in enzymology, 349, 155-166

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@article{bacterialsupero-2002/1,
  title={Bacterial superoxide dismutase and virulence.},
  author={Langford PR, Sansone A, Valenti P, Battistoni A & Kroll JS},
  journal={Methods in enzymology},
  volume={349},
  pages={155-166},
  year = "2002"
}

A histidine-rich metal binding domain at the N terminus of Cu,Zn-superoxide dismutases from pathogenic bacteria: a novel strategy for metal chaperoning.

Battistoni A, Pacello F, Mazzetti AP, Capo C, Kroll JS et al. (2001), The Journal of biological chemistry, 276(32), 30315-30325

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@article{ahistidinerichm-2001/8,
  title={A histidine-rich metal binding domain at the N terminus of Cu,Zn-superoxide dismutases from pathogenic bacteria: a novel strategy for metal chaperoning.},
  author={Battistoni A, Pacello F, Mazzetti AP, Capo C, Kroll JS et al.},
  journal={The Journal of biological chemistry},
  volume={276},
  pages={30315-30325},
  year = "2001"
}

Bacterial copper- and zinc-cofactored superoxide dismutase contributes to the pathogenesis of systemic salmonellosis.

Farrant JL, Sansone A, Canvin JR, Pallen MJ, Langford PR et al. (1997), Molecular microbiology, 25(4), 785-796

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@article{bacterialcopper-1997/8,
  title={Bacterial copper- and zinc-cofactored superoxide dismutase contributes to the pathogenesis of systemic salmonellosis.},
  author={Farrant JL, Sansone A, Canvin JR, Pallen MJ, Langford PR et al.},
  journal={Molecular microbiology},
  volume={25},
  pages={785-796},
  year = "1997"
}