Showing 50 publications by Vicente Grau Colomer
Quantitative analysis of bone marrow fibrosis highlights heterogeneity in myelofibrosis and augments histological assessment: An Insight from a phase II clinical study of zinpentraxin alfa.
Ryou H, Sirinukunwattana K, Wood R, Aberdeen A, Rittscher J et al. (2024), HemaSphere, 8(6), e105
BibTeX
@article{quantitativeana-2024/6,
title={Quantitative analysis of bone marrow fibrosis highlights heterogeneity in myelofibrosis and augments histological assessment: An Insight from a phase II clinical study of zinpentraxin alfa.},
author={Ryou H, Sirinukunwattana K, Wood R, Aberdeen A, Rittscher J et al.},
journal={HemaSphere},
volume={8},
pages={e105},
year = "2024"
}
SSL-CPCD: Self-supervised learning with composite pretext-class discrimination for improved generalisability in endoscopic image analysis.
Xu Z, Rittscher J & Ali S (2024), IEEE transactions on medical imaging, PP
BibTeX
@article{sslcpcdselfsupe-2024/6,
title={SSL-CPCD: Self-supervised learning with composite pretext-class discrimination for improved generalisability in endoscopic image analysis.},
author={Xu Z, Rittscher J & Ali S},
journal={IEEE transactions on medical imaging},
volume={PP},
year = "2024"
}
Artificial Intelligence-Based Quality Assessment of Histopathology Whole-Slide Images within a Clinical Workflow: Assessment of 'PathProfiler' in a Diagnostic Pathology Setting.
Browning L, Jesus C, Malacrino S, Guan Y, White K et al. (2024), Diagnostics (Basel, Switzerland), 14(10), 990
BibTeX
@article{artificialintel-2024/5,
title={Artificial Intelligence-Based Quality Assessment of Histopathology Whole-Slide Images within a Clinical Workflow: Assessment of 'PathProfiler' in a Diagnostic Pathology Setting.},
author={Browning L, Jesus C, Malacrino S, Guan Y, White K et al.},
journal={Diagnostics (Basel, Switzerland)},
volume={14},
pages={990},
publisher={MDPI},
year = "2024"
}
Adjuvant COX inhibition augments STING signaling and cytolytic T cell infiltration in irradiated 4T1 tumors.
Ridnour LA, Cheng RY, Kedei N, Somasundaram V, Bhattacharyya DD et al. (2024), JCI insight, 9(12), e165356
BibTeX
@article{adjuvantcoxinhi-2024/5,
title={Adjuvant COX inhibition augments STING signaling and cytolytic T cell infiltration in irradiated 4T1 tumors.},
author={Ridnour LA, Cheng RY, Kedei N, Somasundaram V, Bhattacharyya DD et al.},
journal={JCI insight},
volume={9},
pages={e165356},
year = "2024"
}
Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy
Lafarge MW, Domingo E, Sirinukunwattana K, Wood R, Samuel L et al. (2024), npj Precision Oncology, 8(1)
BibTeX
@article{imagebasedconse-2024/4,
title={Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy},
author={Lafarge MW, Domingo E, Sirinukunwattana K, Wood R, Samuel L et al.},
journal={npj Precision Oncology},
volume={8},
number={89},
publisher={Springer Nature},
year = "2024"
}
Predicting clinical endpoints and visual changes with quality-weighted tissue-based renal histological features
Tam KH, Soares MF, Kers J, Sharples EJ, Ploeg RJ et al. (2024), Frontiers in Transplantation, 3, 1305468
BibTeX
@article{predictingclini-2024/4,
title={Predicting clinical endpoints and visual changes with quality-weighted tissue-based renal histological features},
author={Tam KH, Soares MF, Kers J, Sharples EJ, Ploeg RJ et al.},
journal={Frontiers in Transplantation},
volume={3},
pages={1305468},
publisher={Frontiers},
year = "2024"
}
Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge
Ali S, Ghatwary N, Jha D, Isik-Polat E, Polat G et al. (2024), Scientific Reports, 14(1)
BibTeX
@article{assessinggenera-2024/1,
title={Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge},
author={Ali S, Ghatwary N, Jha D, Isik-Polat E, Polat G et al.},
journal={Scientific Reports},
volume={14},
number={2032},
publisher={Springer Nature},
year = "2024"
}
Quantitative interpretation of bone marrow biopsies in MPN-What's the point in a molecular age?
Ryou H, Lomas O, Theissen H, Thomas E, Rittscher J et al. (2023), British journal of haematology, 203(4), 523-535
BibTeX
@article{quantitativeint-2023/11,
title={Quantitative interpretation of bone marrow biopsies in MPN-What's the point in a molecular age?},
author={Ryou H, Lomas O, Theissen H, Thomas E, Rittscher J et al.},
journal={British journal of haematology},
volume={203},
pages={523-535},
year = "2023"
}
FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation.
Tomar NK, Jha D, Riegler MA, Johansen HD, Johansen D et al. (2023), IEEE transactions on neural networks and learning systems, 34(11), 9375-9388
BibTeX
@article{fanetafeedbacka-2023/11,
title={FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation.},
author={Tomar NK, Jha D, Riegler MA, Johansen HD, Johansen D et al.},
journal={IEEE transactions on neural networks and learning systems},
volume={34},
pages={9375-9388},
year = "2023"
}
Quantitative Analysis of Bone Marrow Features Highlights Heterogeneity in Myelofibrosis Patients Treated with Zinpentraxin Alfa in a Phase II Clinical Study
Ryou H, Sirinukunwattana K, Wood R, Aberdeen A, Rittscher J et al. (2023), Blood, 142(Supplement 1), 4558
BibTeX
@article{quantitativeana-2023/11,
title={Quantitative Analysis of Bone Marrow Features Highlights Heterogeneity in Myelofibrosis Patients Treated with Zinpentraxin Alfa in a Phase II Clinical Study},
author={Ryou H, Sirinukunwattana K, Wood R, Aberdeen A, Rittscher J et al.},
journal={Blood},
volume={142},
pages={4558},
publisher={American Society of Hematology},
year = "2023"
}
Quantitative interpretation of bone marrow biopsies in MPN—what's the point in a molecular age?
Ryou H, Lomas O, Theissen H, Thomas E, Rittscher J et al. (2023), British Journal of Haematology, 203(4), 523-535
BibTeX
@article{quantitativeint-2023/10,
title={Quantitative interpretation of bone marrow biopsies in MPN—what's the point in a molecular age?},
author={Ryou H, Lomas O, Theissen H, Thomas E, Rittscher J et al.},
journal={British Journal of Haematology},
volume={203},
pages={523-535},
publisher={Wiley},
year = "2023"
}
Beyond attention: deriving biologically interpretable insights from weakly-supervised multiple-instance learning models
Bonnaffé W, Group CIP, Hamdy F, Hu Y, Mills I et al. (2023)
Predicting the future risk of lung cancer: development, and internal and external validation of the CanPredict (lung) model in 19·67 million people and evaluation of model performance against seven other risk prediction models.
Liao W, Coupland CAC, Burchardt J, Baldwin DR, DART initiative et al. (2023), The Lancet. Respiratory medicine, 11(8), 685-697
BibTeX
@article{predictingthefu-2023/8,
title={Predicting the future risk of lung cancer: development, and internal and external validation of the CanPredict (lung) model in 19·67 million people and evaluation of model performance against seven other risk prediction models.},
author={Liao W, Coupland CAC, Burchardt J, Baldwin DR, DART initiative et al.},
journal={The Lancet. Respiratory medicine},
volume={11},
pages={685-697},
year = "2023"
}
SSL-CPCD: Self-supervised learning with composite pretext-class discrimination for improved generalisability in endoscopic image analysis
Xu Z, Rittscher J & Ali S (2023)
Predicting the future risk of lung cancer: development, and internal and external validation of the CanPredict (lung) model in 19·67 million people and evaluation of model performance against seven other risk prediction models
Liao W, Coupland CAC, Burchardt J, Baldwin DR, Gleeson FV et al. (2023), Lancet Respiratory Medicine, 11(8), 685-697
BibTeX
@article{predictingthefu-2023/4,
title={Predicting the future risk of lung cancer: development, and internal and external validation of the CanPredict (lung) model in 19·67 million people and evaluation of model performance against seven other risk prediction models},
author={Liao W, Coupland CAC, Burchardt J, Baldwin DR, Gleeson FV et al.},
journal={Lancet Respiratory Medicine},
volume={11},
pages={685-697},
publisher={Elsevier},
year = "2023"
}
Leveraging Inter-Annotator Disagreement for Semi-Supervised Segmentation
Sauer A, Dmitrieva M, Han H & Rittscher J (2023), 00, 1-5
A multi-centre polyp detection and segmentation dataset for generalisability assessment
Ali S, Jha D, Ghatwary N, Realdon S, Cannizzaro R et al. (2023), Scientific Data, 10
BibTeX
@article{amulticentrepol-2023/2,
title={A multi-centre polyp detection and segmentation dataset for generalisability assessment},
author={Ali S, Jha D, Ghatwary N, Realdon S, Cannizzaro R et al.},
journal={Scientific Data},
volume={10},
number={75},
publisher={Springer Nature},
year = "2023"
}
Correction: Continuous Indexing of Fibrosis (CIF): improving the assessment and classification of MPN patients.
Ryou H, Sirinukunwattana K, Aberdeen A, Grindstaff G, Stolz BJ et al. (2023), Leukemia
Deep Visualisation-Based Interpretable Analysis of Digital Pathology Images for Colorectal Cancer
Guérin A, Basu S, Chakraborti T & Rittscher J (2023), Lecture Notes in Networks and Systems, 690 LNNS, 555-565
Joint Prediction of Response to Therapy, Molecular Traits, and Spatial Organisation in Colorectal Cancer Biopsies
Wood R, Domingo E, Sirinukunwattana K, Lafarge MW, Koelzer VH et al. (2023), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14224 LNCS, 758-767
LEVERAGING INTER-ANNOTATOR DISAGREEMENT FOR SEMI-SUPERVISED SEGMENTATION
Sauer A, Dmitrieva M, Han H & Rittscher J (2023), 2023 IEEE 20TH INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, ISBI
Deep Visualisation-Based Interpretable Analysis of Digital Pathology Images for Colorectal Cancer
Guérin A, Basu S, Chakraborti T & Rittscher J (2023), 690, 555-565
Joint Prediction of Response to Therapy, Molecular Traits, and Spatial Organisation in Colorectal Cancer Biopsies
Wood R, Domingo E, Sirinukunwattana K, Lafarge MW, Koelzer VH et al. (2023), 14224, 758-767
Continuous Indexing of Fibrosis (CIF): improving the assessment and classification of MPN patients
Ryou H, Sirinukunwattana K, Aberdeen A, Grindstaff G, Stolz BJ et al. (2022), Leukemia
Continuous Indexing of Fibrosis (CIF): improving the assessment and classification of MPN patients
Harrington H, Ryou H, Sirinukunwattana K, Aberdeen A, Grindstaff G et al. (2022), Leukemia, 37, 348-358
BibTeX
@article{continuousindex-2022/12,
title={Continuous Indexing of Fibrosis (CIF): improving the assessment and classification of MPN patients},
author={Harrington H, Ryou H, Sirinukunwattana K, Aberdeen A, Grindstaff G et al.},
journal={Leukemia},
volume={37},
pages={348-358},
publisher={Springer Nature},
year = "2022"
}
Enhancing local context of histology features in vision transformers
Wood R, Sirinukunwattana K, Domingo E, Sauer A, Lafarge M et al. (2022), Proceedings of the 25th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022), 13602, 54-163
BibTeX
@inproceedings{enhancinglocalc-2022/11,
title={Enhancing local context of histology features in vision transformers},
author={Wood R, Sirinukunwattana K, Domingo E, Sauer A, Lafarge M et al.},
booktitle={25th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2022)},
pages={54-163},
year = "2022"
}
A graph based neural network approach to immune profiling of multiplexed tissue samples
Martin NG, Malacrino S, Wojciechowska M, Campo L, Jones H et al. (2022), 3063-3067
Multi-scale graphical representation of cell environment
Theissen H, Chakraborty T, Malacrino S, Royston D & Rittscher J (2022), 2022, 3522-3525
Active data enrichment by learning what to annotate in digital pathology
Batchkala G, Chakraborti T, Gleeson F, McCole M & Rittscher J (2022), Cancer Prevention Through Early Detection: First International Workshop, CaPTion 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings, 118-127
BibTeX
@inproceedings{activedataenric-2022/9,
title={Active data enrichment by learning what to annotate in digital pathology},
author={Batchkala G, Chakraborti T, Gleeson F, McCole M & Rittscher J},
booktitle={1st MICCAI Workshop on Cancer Prevention through Early Detection (CaPTion 2022)},
pages={118-127},
year = "2022"
}
RFID analysis of the complexity of cellular pathology workflow—An opportunity for digital pathology
Browning L, White K, Siiankoski D, Colling R, Roskell D et al. (2022), Frontiers in Medicine, 9
BibTeX
@article{rfidanalysisoft-2022/8,
title={RFID analysis of the complexity of cellular pathology workflow—An opportunity for digital pathology},
author={Browning L, White K, Siiankoski D, Colling R, Roskell D et al.},
journal={Frontiers in Medicine},
volume={9},
number={933933},
publisher={Frontiers Media},
year = "2022"
}
Multi-class motion-based semantic segmentation for ureteroscopy and laser lithotripsy
Gupta S, Ali S, Goldsmith L, Turney B & Rittscher J (2022), Computerized Medical Imaging and Graphics, 101
BibTeX
@article{multiclassmotio-2022/8,
title={Multi-class motion-based semantic segmentation for ureteroscopy and laser lithotripsy},
author={Gupta S, Ali S, Goldsmith L, Turney B & Rittscher J},
journal={Computerized Medical Imaging and Graphics},
volume={101},
number={102112},
publisher={Elsevier},
year = "2022"
}
Patch-level instance-group discrimination with pretext-invariant learning for colitis scoring
Xu Z, Ali S, Gupta S, Leedham S, East JE et al. (2022)
Impact of the transition to digital pathology in a clinical setting on histopathologists in training: experiences and perceived challenges within a UK training region
Browning L, Winter L, Cooper RA, Ghosh A, Dytor T et al. (2022), Journal of Clinical Pathology, 76, 712-718
BibTeX
@article{impactofthetran-2022/7,
title={Impact of the transition to digital pathology in a clinical setting on histopathologists in training: experiences and perceived challenges within a UK training region},
author={Browning L, Winter L, Cooper RA, Ghosh A, Dytor T et al.},
journal={Journal of Clinical Pathology},
volume={76},
pages={712-718},
publisher={BMJ Publishing Group},
year = "2022"
}
Self-Supervised Voxel-Level Representation Rediscovers Subcellular Structures in Volume Electron Microscopy
Han H, Dmitrieva M, Sauer A, Tam KH & Rittscher J (2022), 00, 1873-1882
BibTeX
@inproceedings{selfsupervisedv-2022/6,
title={Self-Supervised Voxel-Level Representation Rediscovers Subcellular Structures in Volume Electron Microscopy},
author={Han H, Dmitrieva M, Sauer A, Tam KH & Rittscher J},
booktitle={2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)},
pages={1873-1882},
year = "2022"
}
Automated quality assessment of large digitised histology cohorts by artificial intelligence
Haghighat M, Browning L, Sirinukunwattana K, Malacrino S, Khalid Alham N et al. (2022), Scientific Reports, 12
BibTeX
@article{automatedqualit-2022/3,
title={Automated quality assessment of large digitised histology cohorts by artificial intelligence},
author={Haghighat M, Browning L, Sirinukunwattana K, Malacrino S, Khalid Alham N et al.},
journal={Scientific Reports},
volume={12},
number={5002},
publisher={Springer Nature},
year = "2022"
}
Additive Angular Margin Loss and Model Scaling Network for Optimised Colitis Scoring
Xu Z, Ali S, East J & Rittscher J (2022), 00, 1-5
FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation.
Tomar NK, Jha D, Riegler MA, Johansen HD, Johansen D et al. (2022), IEEE transactions on neural networks and learning systems, PP
Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge
Ali S, Ghatwary N, Jha D, Isik-Polat E, Polat G et al. (2022)
A Graph Based Neural Network Approach to Immune Profiling of Multiplexed Tissue Samples
Martin NG, Malacrino S, Wojciechowska M, Campo L, Jones H et al. (2022)
BibTeX
@misc{agraphbasedneur-2022/2,
title={A Graph Based Neural Network Approach to Immune Profiling of Multiplexed
Tissue Samples},
author={Martin NG, Malacrino S, Wojciechowska M, Campo L, Jones H et al.},
year = "2022"
}
Continuous Indexing of Fibrosis (CIF): Improving the Assessment and Classification of MPN Patients
Ryou H, Sirinukunwattana K, Aberdeen A, Grindstaff G, Stolz B et al. (2022)
Predicting Clinical Endpoints and Visual Changes with Quality-Weighted Tissue-based Renal Histological Features
Tam KH, Soares M, Kers J, Sharples E, Ploeg R et al. (2022)
Predicting Molecular Traits from Tissue Morphology Through Self-interactive Multi-instance Learning
Hu Y, Sirinukunwattana K, Gaitskell K, Wood R, Verrill C et al. (2022), 13432, 130-139
Profiling DNA Damage in 3D Histology Samples
delas Peñas KE, Haeusler R, Feng S, Magidson V, Dmitrieva M et al. (2022), 13578, 84-93
Self-supervised Approach for a Fully Assistive Esophageal Surveillance: Quality, Anatomy and Neoplasia Guidance
Xu Z, Ali S, Celik N, Bailey A, Braden B et al. (2022), 13581, 14-23
Patch-Level Instance-Group Discrimination with Pretext-Invariant Learning for Colitis Scoring
Xu Z, Ali S, Gupta S, Leedham S, East JE et al. (2022), 13583, 101-110
UNet-eVAE: Iterative Refinement Using VAE Embodied Learning for Endoscopic Image Segmentation
Gupta S, Ali S, Xu Z, Bhattarai B, Turney B et al. (2022), 13583, 161-170
Automated annotator: capturing expert knowledge for free
Elmes S, Chakraborti T, Fan M, Uhlig H & Rittscher J (2021), 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2664-2667
BibTeX
@inproceedings{automatedannota-2021/12,
title={Automated annotator: capturing expert knowledge for free},
author={Elmes S, Chakraborti T, Fan M, Uhlig H & Rittscher J},
booktitle={43rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)},
pages={2664-2667},
year = "2021"
}
Digital pathology transformation in a supraregional germ cell tumour network
Colling R, Protheroe A, Sullivan M, Macpherson R, Tuthill M et al. (2021), Diagnostics, 11(12)
Learning Cellular Phenotypes through Supervision.
Theissen H, Chakraborti T, Malacrino S, Sirinukunwattana K, Royston D et al. (2021), Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 2021, 3592-3595
EndoUDA: a modality independent segmentation approach for endoscopy imaging
Celik N, Ali S, Gupta S, Braden B & Rittscher J (2021), Medical Image Computing and Computer Assisted Intervention – MICCAI 2021, Pt III, 12903, 303-312
BibTeX
@inproceedings{endoudaamodalit-2021/9,
title={EndoUDA: a modality independent segmentation approach for endoscopy imaging},
author={Celik N, Ali S, Gupta S, Braden B & Rittscher J},
booktitle={24th International Conference - Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 },
pages={303-312},
year = "2021"
}