Showing 50 publications by Susanna-Assunta Sansone
Developing Fundamental Research Practice Training at the University of Oxford
Callaghan S, Casci T, Dally K, Fortunato L, Palmero Fernández M et al. (2024), Exchanges The Interdisciplinary Research Journal, 11(3), 66-79
BibTeX
@article{developingfunda-2024/8,
title={Developing Fundamental Research Practice Training at the University of Oxford},
author={Callaghan S, Casci T, Dally K, Fortunato L, Palmero Fernández M et al.},
journal={Exchanges The Interdisciplinary Research Journal},
volume={11},
pages={66-79},
publisher={University of Warwick},
year = "2024"
}
A research data management (RDM) community for ELIXIR.
D'Anna F, Jareborg N, Jetten M, Ahokas M, Alper P et al. (2024), F1000Research, 13, ELIXIR-230
“Be sustainable”: EOSC-Life recommendations for implementation of FAIR principles in life science data handling
David R, Rybina A, Burel J-M, Lister A & Sansone S (2023), The EMBO Journal, 42(23)
BibTeX
@article{besustainableeo-2023/11,
title={“Be sustainable”: EOSC-Life recommendations for implementation of FAIR principles in life science data handling},
author={David R, Rybina A, Burel J-M, Lister A & Sansone S},
journal={The EMBO Journal},
volume={42},
number={e115008},
publisher={EMBO Press},
year = "2023"
}
"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
David R, Rybina A, Burel J-M, Heriche J-K, Audergon P et al. (2023), The EMBO journal, e115008
"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.
David R, Rybina A, Burel J-M, Heriche J-K, Audergon P et al. (2023), The EMBO journal, e115008
BibTeX
@article{besustainableeo-2023/11,
title={"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.},
author={David R, Rybina A, Burel J-M, Heriche J-K, Audergon P et al.},
journal={The EMBO journal},
pages={e115008},
publisher={EMBO},
year = "2023"
}
FAIR, ethical, and coordinated data sharing for COVID-19 response: a scoping review and cross-sectional survey of COVID-19 data sharing platforms and registries.
Maxwell L, Shreedhar P, Dauga D, McQuilton P, Terry RF et al. (2023), The Lancet. Digital health, 5(10), e712-e736
BibTeX
@article{fairethicalandc-2023/10,
title={FAIR, ethical, and coordinated data sharing for COVID-19 response: a scoping review and cross-sectional survey of COVID-19 data sharing platforms and registries.},
author={Maxwell L, Shreedhar P, Dauga D, McQuilton P, Terry RF et al.},
journal={The Lancet. Digital health},
volume={5},
pages={e712-e736},
year = "2023"
}
FAIR, ethical, and coordinated data sharing for COVID-19 response: a scoping review and cross-sectional survey of COVID-19 data sharing platforms and registries
Maxwell L, Shreedhar P, Dauga D, McQuilton P, Terry RF et al. (2023), Lancet Digital Health, 5(10), e712-e736
BibTeX
@article{fairethicalandc-2023/10,
title={FAIR, ethical, and coordinated data sharing for COVID-19 response: a scoping review and cross-sectional survey of COVID-19 data sharing platforms and registries},
author={Maxwell L, Shreedhar P, Dauga D, McQuilton P, Terry RF et al.},
journal={Lancet Digital Health},
volume={5},
pages={e712-e736},
publisher={Elsevier},
year = "2023"
}
Umbrella data management plans to integrate FAIR data: lessons from the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
David R, Richard AS, Connellan C, Lister A, Romano P et al. (2023), Data Science Journal, 22
BibTeX
@article{umbrelladataman-2023/9,
title={Umbrella data management plans to integrate FAIR data: lessons from the ISIDORe and BY-COVID Consortia for Pandemic Preparedness},
author={David R, Richard AS, Connellan C, Lister A, Romano P et al.},
journal={Data Science Journal},
volume={22},
number={35},
publisher={Ubiquity Press},
year = "2023"
}
Community-driven governance of FAIRness assessment: an open issue, an open discussion.
Wilkinson MD, Sansone S-A, Méndez E, David R, Dennis R et al. (2023), Open research Europe, 2, 146
The Translational Data Catalog - discoverable biomedical datasets
Welter D, Rocca-Serra P, Grouès V, Sallam N, Ancien F et al. (2023), Scientific Data, 10
The Translational Data Catalog - discoverable biomedical datasets.
Welter D, Rocca-Serra P, Grouès V, Sallam N, Ancien F et al. (2023), Scientific data, 10(1), 470
FAIR data management: what does it mean for drug discovery?
Gadiya Y, Ioannidis V, Henderson D, Gribbon P, Rocca-Serra P et al. (2023), Frontiers in Drug Discovery, 3
BibTeX
@article{fairdatamanagem-2023/7,
title={FAIR data management: what does it mean for drug discovery?},
author={Gadiya Y, Ioannidis V, Henderson D, Gribbon P, Rocca-Serra P et al.},
journal={Frontiers in Drug Discovery},
volume={3},
number={1226727},
publisher={Frontiers Media},
year = "2023"
}
The FAIR Cookbook - the essential resource for and by FAIR doers
Rocca-Serra P, Gu W, Ioannidis V, Abbassi-Daloii T, Capella-Gutierrez S et al. (2023), Scientific Data, 10
BibTeX
@article{thefaircookbook-2023/5,
title={The FAIR Cookbook - the essential resource for and by FAIR doers},
author={Rocca-Serra P, Gu W, Ioannidis V, Abbassi-Daloii T, Capella-Gutierrez S et al.},
journal={Scientific Data},
volume={10},
number={292},
publisher={Springer Nature},
year = "2023"
}
FAIR in action - a flexible framework to guide FAIRification
Welter D, Juty N, Rocca-Serra P, Xu F, Henderson D et al. (2023), Scientific Data, 10(1)
The FAIR Cookbook - the essential resource for and by FAIR doers.
Rocca-Serra P, Gu W, Ioannidis V, Abbassi-Daloii T, Capella-Gutierrez S et al. (2023), Scientific data, 10(1), 292
FAIR in action - a flexible framework to guide FAIRification.
Welter D, Juty N, Rocca-Serra P, Xu F, Henderson D et al. (2023), Scientific data, 10(1), 291
Community-driven governance of FAIRness assessment: an open issue, an open discussion
Wilkinson M, Sansone S-A, Méndez E, David R, Dennis R et al. (2023)
Community-driven governance of FAIRness assessment: an open issue, an open discussion
Wilkinson MD, Sansone S-A, Méndez E, David R, Dennis R et al. (2022), Open Research Europe, 2
BibTeX
@article{communitydriven-2022/12,
title={Community-driven governance of FAIRness assessment: an open issue, an open discussion},
author={Wilkinson MD, Sansone S-A, Méndez E, David R, Dennis R et al.},
journal={Open Research Europe},
volume={2},
number={146},
publisher={European Commission},
year = "2022"
}
Making Common Fund data more findable: catalyzing a data ecosystem
Charbonneau AL, Brady A, Czajkowski K, Aluvathingal J, Canchi S et al. (2022), GigaScience, 11
BibTeX
@article{makingcommonfun-2022/11,
title={Making Common Fund data more findable: catalyzing a data ecosystem},
author={Charbonneau AL, Brady A, Czajkowski K, Aluvathingal J, Canchi S et al.},
journal={GigaScience},
volume={11},
number={giac105},
publisher={Oxford University Press},
year = "2022"
}
Machine actionable metadata models
Batista D, Gonzalez-Beltran A, Sansone S-A & Rocca-Serra P (2022), Scientific Data, 9
Perspectives on data sharing and the New NIH policy from the European Union
Bjaalie JG, Goble C, Sansone S-A, Nakamura R & Martone M (2022), Harvard Data Science Review, 4(3)
Reporting guidelines for human microbiome research: the STORMS checklist
Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L et al. (2021), Nature Medicine, 27(11), 1885-1892
BibTeX
@article{reportingguidel-2021/11,
title={Reporting guidelines for human microbiome research: the STORMS checklist},
author={Mirzayi C, Renson A, Zohra F, Elsafoury S, Geistlinger L et al.},
journal={Nature Medicine},
volume={27},
pages={1885-1892},
publisher={Springer Nature},
year = "2021"
}
ELIXIR and toxicology: a community in development
Martens M, Stierum R, Schymanski E, Evelo C, Aalizadeh R et al. (2021), F1000Research, 10
Orchestrating and sharing large multimodal data for transparent and reproducible research.
Mammoliti A, Smirnov P, Nakano M, Safikhani Z, Eeles C et al. (2021), Nature communications, 12(1), 5797
ISA API: an open platform for interoperable life science experimental metadata
Johnson D, Batista D, Cochrane K, Davey RP, Etuk A et al. (2021), GigaScience, 10(9)
BibTeX
@article{isaapianopenpla-2021/9,
title={ISA API: an open platform for interoperable life science experimental metadata},
author={Johnson D, Batista D, Cochrane K, Davey RP, Etuk A et al.},
journal={GigaScience},
volume={10},
number={giab060},
publisher={Oxford University Press},
year = "2021"
}
Barely sufficient practices in scientific computing
Lee G, Bacon S, Bush I, Fortunato L, Gavaghan D et al. (2021), Patterns, 2(2)
ELIXIR and Toxicology: a community in development.
Martens M, Stierum R, Schymanski EL, Evelo CT, Aalizadeh R et al. (2021), F1000Research, 10, ELIXIR-1129
FAIRsharing: Data and Metadata Standards and Data Policies for Biomedical Research
McQuilton P & Sansone S-A (2021), 544-546
Making Common Fund data more findable: Catalyzing a Data Ecosystem
Charbonneau A, Brady A, Czajkowski K, Aluvathingal J, Canchi S et al. (2021)
Making Common Fund data more findable: Catalyzing a Data Ecosystem
Charbonneau A, Brady A, Czajkowski K, Aluvathingal J, Canchi S et al. (2021)
Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group
Austin C, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al. (2020)
Transparency and reproducibility in artificial intelligence.
Haibe-Kains B, Adam GA, Hosny A, Khodakarami F, Massive Analysis Quality Control (MAQC) Society Board of Directors et al. (2020), Nature, 586(7829), E14-E16
BibTeX
@article{transparencyand-2020/10,
title={Transparency and reproducibility in artificial intelligence.},
author={Haibe-Kains B, Adam GA, Hosny A, Khodakarami F, Massive Analysis Quality Control (MAQC) Society Board of Directors et al.},
journal={Nature},
volume={586},
pages={E14-E16},
year = "2020"
}
COPO: a metadata platform for brokering FAIR data in the life sciences
Shaw F, Etuk A, Minotto A, Gonzalez-Beltran A, Johnson D et al. (2020), F1000Research, 9, 495-495
COVID-19 pandemic reveals the peril of ignoring metadata standards
Schriml LM, Chuvochina M, Davies N, Eloe-Fadrosh EA, Finn RD et al. (2020), Scientific Data, 7(1)
Community standards for open cell migration data
Gonzalez-Beltran AN, Masuzzo P, Ampe C, Rocca-Serra P, Sansone S et al. (2020), GigaScience, 5(May 2020)
Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN et al. (2020), New Phytologist
TeSS: a platform for discovering life science training opportunities
Beard N, Bacall F, Nenadic A, Thurston M, Goble CA et al. (2020), Bioinformatics, 36(10), 3290-3291
Semantic concept schema of the linear mixed model of experimental observations
Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN et al. (2020), Scientific Data, 7(1)
BibTeX
@article{semanticconcept-2020/2,
title={Semantic concept schema of the linear mixed model of experimental observations},
author={Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN et al.},
journal={Scientific Data},
volume={7},
number={70},
publisher={Nature Research },
year = "2020"
}
Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.
Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al. (2020), Wellcome open research, 5, 267
BibTeX
@article{fosteringglobal-2020/1,
title={Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.},
author={Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T et al.},
journal={Wellcome open research},
volume={5},
pages={267},
year = "2020"
}
Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data
McQuilton P, Batista D, Beyan O, Granell R, Coles S et al. (2020), Data Intelligence, 2(1-2), 151-157
BibTeX
@article{helpingtheconsu-2020/1,
title={Helping the Consumers and Producers of Standards, Repositories and Policies to Enable FAIR Data},
author={McQuilton P, Batista D, Beyan O, Granell R, Coles S et al.},
journal={Data Intelligence},
volume={2},
pages={151-157},
publisher={China Science Publishing & Media},
year = "2020"
}
FAIR Principles: Interpretations and Implementation Considerations
Jacobsen A, de Miranda Azevedo R, Juty N, Batista D, Coles S et al. (2020), Data Intelligence, 2(1-2), 10-29
FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources
Sustkova HP, Hettne KM, Wittenburg P, Jacobsen A, Kuhn T et al. (2020), Data Intelligence, 2(1-2), 158-170
BibTeX
@article{fairconvergence-2020/1,
title={FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources},
author={Sustkova HP, Hettne KM, Wittenburg P, Jacobsen A, Kuhn T et al.},
journal={Data Intelligence},
volume={2},
pages={158-170},
publisher={MIT Press},
year = "2020"
}
Experiment design driven FAIRification of omics data matrices, an exemplar
Rocca-Serra P & Sansone S (2019), Scientific Data, 6, 271
FAIRshake: Toolkit to evaluate the FAIRness of research digital resources
Clarke DJB, Wang L, Jones A, Wojciechowicz ML, Torre D et al. (2019), Cell Systems, 9(5), 417-421
Evaluating FAIR maturity through a scalable, automated, community-governed framework
Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al. (2019), Scientific Data, 6
BibTeX
@article{evaluatingfairm-2019/9,
title={Evaluating FAIR maturity through a scalable, automated, community-governed framework},
author={Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al.},
journal={Scientific Data},
volume={6},
number={174},
publisher={Springer Nature},
year = "2019"
}
Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.
Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al. (2019), Scientific Data, 6
BibTeX
@article{authorcorrectio-2019/9,
title={Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework.},
author={Dumontier M, Sansone S, Bonino Da Silva Santos LO, Prieto M, Batista D et al.},
journal={Scientific Data},
volume={6},
number={230},
publisher={Nature Research},
year = "2019"
}
Evaluating FAIR-Compliance Through an Objective, Automated, Community-Governed Framework
Sansone S-A, McQuilton P, ROCCA-SERRA P & Batista D (2019), Scientific Data