Showing 192 publications by Aidong Yang
Discovery of dietary polyphenols targeting the autoinducer-2 quorum sensing system of pathogenic bacteria.
Wu S, Zhang P, Wang M, Xiao X, Jin H et al. (2026), Gut Microbes, 18(1), 2726629
BibTeX
@article{discoveryofdiet-2026/12,
title={Discovery of dietary polyphenols targeting the autoinducer-2 quorum sensing system of pathogenic bacteria.},
author={Wu S, Zhang P, Wang M, Xiao X, Jin H et al.},
journal={Gut Microbes},
volume={18},
pages={2726629},
publisher={Taylor & Francis},
year = "2026"
}
Predictive modelling of CHO cell culture using enzyme-constrained genome-scale metabolic models coupled with empirical regression
Wee H, Qiu S, Angione C, Ye H, Odeleye AOO et al. (2026), Biochemical Engineering Journal, 235, 110325
BibTeX
@article{predictivemodel-2026/11,
title={Predictive modelling of CHO cell culture using enzyme-constrained genome-scale metabolic models coupled with empirical regression},
author={Wee H, Qiu S, Angione C, Ye H, Odeleye AOO et al.},
journal={Biochemical Engineering Journal},
volume={235},
pages={110325},
publisher={Elsevier},
year = "2026"
}
Wind energy potential assessment for China using long short-term memory-delta and spatial–temporal optimization
Gao J, Huang W, Yang A & Qian Y (2026), Energy Conversion and Management, 367, 121940
BibTeX
@article{windenergypoten-2026/11,
title={Wind energy potential assessment for China using long short-term memory-delta and spatial–temporal optimization},
author={Gao J, Huang W, Yang A & Qian Y},
journal={Energy Conversion and Management},
volume={367},
pages={121940},
publisher={Elsevier},
year = "2026"
}
Response to “Caution: Fundamental data quality issues underlying intelligent prediction of enzyme optimal pH”
Qiu S & Yang A (2026), Briefings in Bioinformatics, 27(5), bbag537
BibTeX
@article{responsetocauti-2026/9,
title={Response to “Caution: Fundamental data quality issues underlying intelligent prediction of enzyme optimal pH”},
author={Qiu S & Yang A},
journal={Briefings in Bioinformatics},
volume={27},
pages={bbag537},
publisher={Oxford University Press (OUP)},
year = "2026"
}
Response to “Addressing flaws in the Seq2Topt dataset for the prediction of enzyme optimal temperature”
Qiu S & Yang A (2026), Briefings in Bioinformatics, 27(3)
BibTeX
@article{responsetoaddre-2026/5,
title={Response to “Addressing flaws in the Seq2Topt dataset for the prediction of enzyme optimal temperature”},
author={Qiu S & Yang A},
journal={Briefings in Bioinformatics},
volume={27},
number={bbag283},
publisher={Oxford University Press},
year = "2026"
}
Substituting fossil fuels in cement production with solar energy to reduce carbon emissions
Williams F & Yang A (2026), Renewable Energy, 260, 125227
Electrochemical direct air capture with intermittent renewable energy: techno-economic insights from solar-driven electrodialysis systems
Liu G, Zhang Y, Lin M & Yang A (2026), EES Solar
BibTeX
@article{electrochemical-2026/2,
title={Electrochemical direct air capture with intermittent renewable energy: techno-economic insights from solar-driven electrodialysis systems},
author={Liu G, Zhang Y, Lin M & Yang A},
journal={EES Solar},
publisher={Royal Society of Chemistry},
year = "2026"
}
Machine learning for enzyme catalytic activity: current progress and future horizons
Qiu S, Saeed H, Leonard W, Li F & Yang A (2026), Briefings in Bioinformatics, 27(1)
BibTeX
@article{machinelearning-2026/1,
title={Machine learning for enzyme catalytic activity: current progress and future horizons},
author={Qiu S, Saeed H, Leonard W, Li F & Yang A},
journal={Briefings in Bioinformatics},
volume={27},
number={bbag002},
publisher={Oxford University Press},
year = "2026"
}
Proteome constrained metabolic modeling of Sus scrofa muscle stem cells for cultured meat production
Qiu S, Kratochvilova E, Huang WE, Cui Z, Agnew T et al. (2026), Metabolic Engineering
Towards decarbonizing the supply chain of dairy industry: current practice and emerging strategies
Ni H, Zeng H, Liu Z, Li W, Miao S et al. (2025), Carbon Neutrality, 4(1), 8-8
Unraveling risk dynamics in the urban food-energy-water system for sustainable management: A coupled model considering trivariate complexity
Li X, Zhang L, Yang A, Hao Y, Zhang P et al. (2025), Technological Forecasting and Social Change, 221, 124332-124332
BibTeX
@article{unravelingriskd-2025/12,
title={Unraveling risk dynamics in the urban food-energy-water system for sustainable management: A coupled model considering trivariate complexity},
author={Li X, Zhang L, Yang A, Hao Y, Zhang P et al.},
journal={Technological Forecasting and Social Change},
volume={221},
pages={124332-124332},
publisher={Elsevier},
year = "2025"
}
Process modelling and analysis of ikaite production for atmospheric CO2 removal through ocean alkalinity enhancement
Lu X, Millar R, Toutam P, Yang A, Foteinis S et al. (2025), Chemical Engineering Research and Design
BibTeX
@article{processmodellin-2025/12,
title={Process modelling and analysis of ikaite production for atmospheric CO2 removal through ocean alkalinity enhancement},
author={Lu X, Millar R, Toutam P, Yang A, Foteinis S et al.},
journal={Chemical Engineering Research and Design},
publisher={Elsevier},
year = "2025"
}
Deep Learning-Based Prediction of Enzyme Optimal pH and Design of Point Mutations to Improve Acid Resistance
Qiu S, Wang N-K, Lu Y, Gong J-S, Shi J-S et al. (2025), ACS Synthetic Biology, 14(12), 4897-4906
BibTeX
@article{deeplearningbas-2025/11,
title={Deep Learning-Based Prediction of Enzyme Optimal pH and Design of Point Mutations to Improve Acid Resistance},
author={Qiu S, Wang N-K, Lu Y, Gong J-S, Shi J-S et al.},
journal={ACS Synthetic Biology},
volume={14},
pages={4897-4906},
publisher={American Chemical Society},
year = "2025"
}
Modeling and Feasibility Assessment of Mineral Carbonation Based on Biological pH Swing for Atmospheric CO 2 Removal
Zhang Y, Long S, Duret MT, Bullock LA, Lam P et al. (2025), ACS Sustainable Chemistry and Engineering, 13(19), 6972-6981
BibTeX
@article{modelingandfeas-2025/5,
title={Modeling and Feasibility Assessment of Mineral Carbonation Based on Biological pH Swing for Atmospheric CO 2 Removal},
author={Zhang Y, Long S, Duret MT, Bullock LA, Lam P et al.},
journal={ACS Sustainable Chemistry and Engineering},
volume={13},
pages={6972-6981},
publisher={American Chemical Society},
year = "2025"
}
Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production
Qiu S, Yang A, Yang X, Ni H, Li W et al. (2025), Metabolic Engineering
Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature
Qiu S, Hu B, Zhao J, Xu W & Yang A (2025), Briefings in Bioinformatics, 26(2)
Assessing the net carbon removal potential by a combination of direct air capture and recycled concrete aggregates carbonation
Chen L & Yang A (2025), Resources, Conservation and Recycling, 212
Quorum sensing regulating the productivity and stability of cross-feeding cocultivation
Chen D, Qu Z, Yang S, Li Y, Yu S et al. (2024), Chemical Engineering Journal, 502
Assembly of functional microbial ecosystems: from molecular circuits to communities.
Wu S, Zhou Y, Dai L, Yang A & Qiao J (2024), FEMS microbiology reviews, fuae026-fuae026
BibTeX
@article{assemblyoffunct-2024/11,
title={Assembly of functional microbial ecosystems: from molecular circuits to communities.},
author={Wu S, Zhou Y, Dai L, Yang A & Qiao J},
journal={FEMS microbiology reviews},
pages={fuae026-fuae026},
publisher={Oxford University Press (OUP)},
year = "2024"
}
Potential of Reducing CO<sub>2</sub> Emissions in Cement Production through Altering Clinker Compositions
Williams F & Yang A (2024), Industrial & Engineering Chemistry Research
BibTeX
@article{potentialofredu-2024/9,
title={Potential of Reducing CO<sub>2</sub> Emissions in Cement Production through Altering Clinker Compositions},
author={Williams F & Yang A},
journal={Industrial & Engineering Chemistry Research},
publisher={American Chemical Society (ACS)},
year = "2024"
}
Design and analysis of quorum sensing language “Interpreter” ecosystem for microbial community
Wu S, Zhang H, Zhou Y, Xu C, Yuan B et al. (2024), Chemical Engineering Journal, 153148-153148
Food–energy–water nexus optimization brings substantial reduction of urban resource consumption and greenhouse gas emissions
Zhang P, Zhang L, Hao Y, Xu M, Pang M et al. (2024), PNAS Nexus, 3(2), pgae028-pgae028
BibTeX
@article{foodenergywater-2024/2,
title={Food–energy–water nexus optimization brings substantial reduction of urban resource consumption and greenhouse gas emissions},
author={Zhang P, Zhang L, Hao Y, Xu M, Pang M et al.},
journal={PNAS Nexus},
volume={3},
pages={pgae028-pgae028},
publisher={Oxford University Press (OUP)},
year = "2024"
}
Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism
Qiu S, Huang Y, Liang S, Zeng H & Yang A (2024), Microbial Biotechnology, 17(2)
BibTeX
@article{systematiceluci-2024/2,
title={Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism},
author={Qiu S, Huang Y, Liang S, Zeng H & Yang A},
journal={Microbial Biotechnology},
volume={17},
number={e14425},
publisher={Wiley},
year = "2024"
}
DLTKcat: deep learning-based prediction of temperature-dependent enzyme turnover rates
Qiu S, Zhao S & Yang A (2024), Briefings in Bioinformatics, 25(1)
Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion
Williams F, Yang A & Nhuchhen DR (2024), Energy Conversion and Management, 300
Model-Based Assessment of Electrochemical Cells and Systems for Atmospheric CO2 Removal
Liu G & Yang A (2024), 53(Energy Environmental Science 4 4 2011), 541-546
Mathematical Modelling of a Novel Mineral Carbonation System Based on Biological pH Swing for Atmospheric CO2 Removal
Zhang Y & Yang A (2024), Computer Aided Chemical Engineering, 53(Archives of Microbiology 116 1978), 2509-2514
BibTeX
@article{mathematicalmod-2024/,
title={Mathematical Modelling of a Novel Mineral Carbonation System Based on Biological pH Swing for Atmospheric CO2 Removal},
author={Zhang Y & Yang A},
journal={Computer Aided Chemical Engineering},
volume={53},
pages={2509-2514},
publisher={Elsevier},
year = "2024"
}
Re-organising nutrients flows in Leicestershire: systemic innovation to transform nutrient flows for environmental and socioeconomic benefits
Yang A, Ng KS, Thompson I, Tsui T, Wei Z et al. (2023)
Decarbonisation pathways of the cement production process via hydrogen and oxy-combustion
Williams F, Yang A & Nhuchhen DR (2023), Energy Conversion and Management, 300
Flux balance analysis-based metabolic modeling of microbial secondary metabolism: current status and outlook
Qiu S, Yang A & Zeng H (2023), PLoS Computational Biology, 19(8)
BibTeX
@article{fluxbalanceanal-2023/8,
title={Flux balance analysis-based metabolic modeling of microbial secondary metabolism: current status and outlook},
author={Qiu S, Yang A & Zeng H},
journal={PLoS Computational Biology},
volume={19},
number={e1011391},
publisher={Public Library of Science},
year = "2023"
}
Dynamic metagenome-scale metabolic modeling of a yogurt bacterial community.
Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al. (2023), Biotechnology and bioengineering, 120(8), 2186-2198
Flux balance analysis-based metabolic modeling of microbial secondary metabolism: Current status and outlook.
Qiu S, Yang A & Zeng H (2023), PLoS computational biology, 19(8), e1011391
Dynamic metagenome-scale metabolic modeling of a yogurt bacterial community
Qiu S, Zeng H, Yang Z, Hung W-L, Wang B et al. (2023), Biotechnology and Bioengineering, 120(8), 2186-2198
Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits
Devlin A, Kossen J, Goldie-Jones H & Yang A (2023), Nature Communications, 14
BibTeX
@article{globalgreenhydr-2023/5,
title={Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits},
author={Devlin A, Kossen J, Goldie-Jones H & Yang A},
journal={Nature Communications},
volume={14},
number={2578},
publisher={Springer Nature},
year = "2023"
}
Global green hydrogen-based steel opportunities surrounding high quality renewable energy and iron ore deposits.
Devlin A, Kossen J, Goldie-Jones H & Yang A (2023), Nature communications, 14(1), 2578
Surrogate modelling-assisted comparison of reactor schemes for carbon dioxide removal by enhanced weathering of minerals using seawater
Zhang J, Yang A, Darton R, Xing L & Vaughan A (2023), Chemical Engineering Journal, 461, 141804-141804
BibTeX
@article{surrogatemodell-2023/4,
title={Surrogate modelling-assisted comparison of reactor schemes for carbon dioxide removal by enhanced weathering of minerals using seawater},
author={Zhang J, Yang A, Darton R, Xing L & Vaughan A},
journal={Chemical Engineering Journal},
volume={461},
number={141804},
pages={141804-141804},
publisher={Elsevier BV},
year = "2023"
}
Quorum sensing-based interactions among drugs, microbes, and diseases
Wu S, Yang S, Wang M, Song N, Feng J et al. (2023), Science China Life Sciences, 66(1), 137-151
Development of a system model to predict flows and performance of regional waste management planning: A case study of England.
Ng KS & Yang A (2023), Journal of environmental management, 325(Pt B), 116585
Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture
Qiu S, Yang Z, Zeng H, Wang B & Yang A (2023), 52, 2619-2624
Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability
Bhasker Nair PNS, Yang NHN, Zhang W, Ng KS & Yang A (2023), 52, 1387-1392
Dynamic microbial-community metabolic modeling for yogurt fermentation based on the metagenome of starter culture
Qiu S, Yang Z, Zeng H, Wang B & Yang A (2023), 52(Biotechnology and Bioengineering 118 1 2021), 2619-2624
Model-based Optimisation of Regional Nutrient Flow and Recovery for Resource and Environmental Sustainability
Nair PNSB, Yang N-HN, Zhang W, Ng KS & Yang A (2023), 52(Science of The Total Environment 612 2018), 1387-1392
Urban bioeconomy: Uncovering its components, impacts and the Urban Bio-Symbiosis
Yang NHN & Yang A (2022), Cleaner Production Letters, 3
Potential of orthogonal and cross-talk quorum sensing for dynamic regulation in cocultivation
Wu S, Qiao J, Yang A & Liu C (2022), CHEMICAL ENGINEERING JOURNAL, 445
Development of a system model to predict flows and performance of regional waste management planning: a case study of England
Ng KS & Yang A (2022), Journal of Environmental Management, 325
BibTeX
@article{developmentofas-2022/10,
title={Development of a system model to predict flows and performance of regional waste management planning: a case study of England},
author={Ng KS & Yang A},
journal={Journal of Environmental Management},
volume={325},
number={116585},
publisher={Elsevier},
year = "2022"
}
Machine learning aided construction of the quorum sensing communication network for human gut microbiota
Wu S, Feng J, Liu C, Wu H, Qiu Z et al. (2022), Nature Communications, 13(1)
BibTeX
@article{machinelearning-2022/6,
title={Machine learning aided construction of the quorum sensing communication network for human gut microbiota},
author={Wu S, Feng J, Liu C, Wu H, Qiu Z et al.},
journal={Nature Communications},
volume={13},
number={3079},
publisher={Springer Nature},
year = "2022"
}
Impact of fast-track regulatory designations on strategic commercialization decisions for autologous cell therapies.
Lam C, Meinert E, Yang A & Cui Z (2022), Regenerative medicine, 17(3), 155-174
Regional conditions shape the food–energy–land nexus of low-carbon indoor farming
Weidner T, Yang A, Forster F & Hamm MW (2022), Nature Food, 3, 206-216
Regional supply chains for decarbonising steel: Energy efficiency and green premium mitigation
Devlin A & Yang A (2022), Energy Conversion and Management, 254
Embracing the era of renewable energy: model-based analysis of the role of operational flexibility in chemical production
Knight T, Chen C & Yang A (2022), 49, 1915-1920