Publications

BibTeX

@misc{machinelearning-2026/10,
  title={Machine learning-assisted directed evolution yields dramatic improvement on novel AAV engineering task},
  author={Luchner M, Vorobieva I, Makkar R, Jozinovic M, Chester S et al.},
  year = "2026"
}

BibTeX

@article{designingneural-2026/9,
  title={Designing neural controllers with optimality and stability guarantees by learning input-output dissipativity},
  author={Wang H, Miao K, de S. Madeira D & Papachristodoulou A},
  journal={Automatica},
  volume={191},
  pages={113120},
  publisher={Elsevier},
  year = "2026"
}

@misc{databasedcluste-2026/9,
  title={Data-Based Clustering and Control of Similar Biological Systems},
  author={Zhang P, Papachristodoulou A & Kempf I},
  year = "2026"
}

BibTeX

@article{sequencefreelan-2026/9,
  title={Sequence-free landscape inference for directed evolution},
  author={Towers S, James J, Steel H & Kempf I},
  journal={PLoS Computational Biology},
  volume={22},
  pages={e1014713-e1014713},
  publisher={Public Library of Science},
  year = "2026"
}

BibTeX

@article{robusttargetede-2026/8,
  title={Robust targeted exploration for systems with non-stochastic disturbances},
  author={Venkatasubramanian J, Koehler J, Cannon M & Allgoewer F},
  journal={Automatica},
  volume={193},
  number={113228},
  publisher={Elsevier},
  year = "2026"
}

@inproceedings{efficientquanti-2026/8,
  title={Efficient quantification of time-series prediction error: optimal selection conformal prediction},
  author={Pang B & Margellos K},
  booktitle={24th European Control Conference (ECC 2026)},
  pages={1665-1670},
  year = "2026"
}

BibTeX

@misc{onthesuboptimal-2026/8,
  title={On the suboptimality of stochastic MPC with varying constraint horizon},
  author={Nascimento AAD, Bertolace A, Papachristodoulou A & Margellos K},
  year = "2026"
}

BibTeX

@misc{onthesuboptimal-2026/8,
  title={On the suboptimality of stochastic MPC with varying constraint horizon},
  author={Nascimento AAD, Bertolace A, Papachristodoulou A & Margellos K},
  year = "2026"
}

BibTeX

@misc{robustmultistep-2026/7,
  title={Robust Multi-step Model Predictive Control with Guaranteed Stability},
  author={Steffen S & Cannon M},
  year = "2026"
}

BibTeX

@misc{successiveconve-2026/7,
  title={Successive convex optimization for transformer encoder model predictive control},
  author={Chen X & Cannon M},
  year = "2026"
}

@article{safeandstablefi-2026/6,
  title={Safe and Stable Filter Design Using a Relaxed Compatibitlity Control Barrier - Lyapunov Condition.},
  author={Wang H, Margellos K & Papachristodoulou A},
  journal={Automatica},
  volume={abs/2407.00414},
  publisher={Elsevier},
  year = "2026"
}

@article{safeandstablefi-2026/6,
  title={Safe and Stable Filter Design Using a Relaxed Compatibitlity Control Barrier - Lyapunov Condition.},
  author={Wang H, Margellos K & Papachristodoulou A},
  journal={Automatica},
  volume={abs/2407.00414},
  publisher={Elsevier},
  year = "2026"
}

@misc{aprototypingfra-2026/5,
  title={A Prototyping Framework for Distributed Control of Multi-Robot Systems},
  author={Memon JA, Nascimento AAD, Margellos K & Papachristodoulou A},
  year = "2026"
}

@misc{aprototypingfra-2026/5,
  title={A Prototyping Framework for Distributed Control of Multi-Robot Systems},
  author={Memon JA, Nascimento AAD, Margellos K & Papachristodoulou A},
  year = "2026"
}

@misc{akoopmansetmemb-2026/5,
  title={A Koopman Set-Membership Approach for Nonlinear Data-Driven Control with Stability Guarantees},
  author={Xie Y, Xiong Z, Berberich J, Papachristodoulou A & Allgöwer F},
  year = "2026"
}

BibTeX

@article{cuclarabelgpuac-2026/5,
  title={CuClarabel: GPU acceleration for a conic optimization solver},
  author={Chen Y, Tse D, Nobel P, Goulart P & Boyd S},
  journal={ACM Transactions on Mathematical Software},
  number={3815420},
  publisher={Association for Computing Machinery},
  year = "2026"
}

BibTeX

@article{prolylhydroxyla-2026/4,
  title={Prolyl hydroxylase-dependent proteolysis enables the orthogonal hypoxia responses in plants},
  author={Shukla V, Iacopino S, Carbonare LD, Del Chiaro A, He Y et al.},
  journal={Nature Communications},
  publisher={Nature Research},
  year = "2026"
}

@misc{adistributedsos-2026/4,
  title={A Distributed SOS Program For Local Stability Analysis of Polynomial PDEs in the PIE Representation},
  author={Richardson CR, Jagt DS, Peet MM & Papachristodoulou A},
  year = "2026"
}

@misc{accelerationofm-2026/4,
  title={Acceleration of Moment Bound Optimization for Stochastic Chemical Reactions Using Reaction-wise Sparsity of Moment Equations},
  author={Sadatoshi T, Papachristodoulou A & Hori Y},
  year = "2026"
}

@misc{learningoverrel-2026/4,
  title={Learning Over-Relaxation Policies for ADMM with Convergence Guarantees},
  author={Lin J, Goulart PJ & Furieri L},
  year = "2026"
}

BibTeX

@article{robustadaptiven-2026/3,
  title={Robust adaptive NMPC using ellipsoidal tubes},
  author={Buerger J & Cannon M},
  journal={IEEE Transactions on Automatic Control},
  volume={71},
  pages={5573-5579},
  publisher={IEEE},
  year = "2026"
}

@misc{robustadaptiven-2026/3,
  title={Robust adaptive NMPC using ellipsoidal tubes},
  author={Buerger J & Cannon M},
  year = "2026"
}

BibTeX

@misc{robusttargetede-2026/3,
  title={Robust targeted exploration for systems with non-stochastic disturbances},
  author={Venkatasubramanian J, Köhler J, Cannon M & Allgöwer F},
  year = "2026"
}

BibTeX

@article{asyntheticerfvi-2026/3,
  title={A synthetic ERFVII-dependent circuit in yeast sheds light on the regulation of early hypoxic responses of plants},
  author={Lavilla-Puerta M, He Y, Piccinini L, Paco LD, Papachristodoulou A et al.},
  journal={Proceedings of the National Academy of Sciences},
  volume={123},
  number={e2524358123},
  publisher={National Academy of Sciences},
  year = "2026"
}

BibTeX

@article{generativedesig-2026/3,
  title={Generative design of synthetic gene circuits for functional and evolutionary properties},
  author={Gallup O & Steel H},
  journal={npj Systems Biology and Applications},
  publisher={Springer Nature},
  year = "2026"
}

BibTeX

@inproceedings{anexperimentala-2026/2,
  title={An Experimental and Numerical Investigation into Compressor Casing Heat Shield Effectiveness †},
  author={Pilkington A, Gopalkrishna V, Barnes C, Lewis L & Bacic M},
  pages={9},
  year = "2026"
}

BibTeX

@misc{computationally-2026/2,
  title={Computationally Tractable Robust Nonlinear Model Predictive Control using DC Programming},
  author={Doff-Sotta M, A-Rahman Z & Cannon M},
  year = "2026"
}

BibTeX

@inproceedings{deeplearningmod-2026/1,
  title={Deep learning model predictive control for deep brain stimulation in Parkinson’s disease},
  author={Steffen S & Cannon M},
  booktitle={64th IEEE Conference on Decision and Control (CDC 2025)},
  pages={5744-5749},
  year = "2026"
}

@misc{hostawarecontro-2026/1,
  title={Host-Aware Control of Gene Expression using Data-Enabled Predictive Control},
  author={Perreault L, Kempf I, Sechkar K, Lugagne J-B & Papachristodoulou A},
  year = "2026"
}

@article{hostawarecontro-2026/1,
  title={Host-Aware Control of Gene Expression using Data-Enabled Predictive Control.},
  author={Perreault L, Kempf I, Sechkar K, Lugagne J-B & Papachristodoulou A},
  journal={CoRR},
  volume={abs/2601.01693},
  year = "2026"
}

BibTeX

@inproceedings{datadrivenperfo-2026/1,
  title={Data-driven performance guarantees for parametric optimization problems},
  author={Huang J, Goulart P & Margellos K},
  booktitle={64th IEEE Conference on Decision and Control (CDC 2025)},
  pages={1967-1973},
  year = "2026"
}

BibTeX

@article{clarabelaninter-2026/1,
  title={Clarabel: An interior-point solver for conic programs with quadratic objectives},
  author={Goulart PJ & Chen Y},
  journal={Mathematical Programming Computation},
  year = "2026"
}

@inproceedings{krylovsubspacea-2026/1,
  title={Krylov Subspace Acceleration for First-Order Splitting Methods in Convex Quadratic Programming},
  author={Pereira GB & Goulart PJ},
  pages={1544-1551},
  year = "2026"
}

BibTeX

@article{quantumspinreso-2026/1,
  title={Quantum spin resonance in engineered proteins for multimodal sensing},
  author={Abrahams G, Štuhec A, Spreng V, Henry R, Kempf I et al.},
  journal={Nature},
  pages={1-8},
  publisher={Nature Research},
  year = "2026"
}

BibTeX

@article{characterizatio-2026/,
  title={Characterization of Synthetic Gene Circuits with Absolute Quantification in Continuous Culture},
  author={Stacey SB, Lee TA, Gallup O, Csibra E, Papachristodoulou A et al.},
  journal={Methods in Molecular Biology},
  volume={3041},
  pages={145-195},
  publisher={Springer Nature},
  year = "2026"
}

BibTeX

@article{dynamicrobustco-2026/,
  title={Dynamic Robust Control of Microbial Communities Using Cybergenetics},
  author={Lee TA, Stacey SB, Gallup O, Steel H & Sechkar K},
  journal={Methods in Molecular Biology},
  volume={3041},
  pages={261-285},
  publisher={Springer Nature},
  year = "2026"
}

BibTeX

@inproceedings{automaticfeedba-2025/12,
  title={Automatic Feedback Control for Resource-Aware Characterisation of Genetic Circuits},
  author={Sechkar K & Steel H},
  booktitle={2025 IEEE 64th Conference on Decision and Control (CDC)},
  pages={1913-1918},
  year = "2025"
}

BibTeX

@inproceedings{dataenabledpred-2025/12,
  title={Data-Enabled Predictive Control for Nonlinear Systems Based on a Koopman Bilinear Realization},
  author={Xiong Z, Yuan Z, Miao K, Wang H, Cortés J et al.},
  booktitle={2025 IEEE 64th Conference on Decision and Control (CDC)},
  pages={6498-6503},
  year = "2025"
}

@misc{modelpredictive-2025/11,
  title={Model Predictive Control with Multiple Constraint Horizons},
  author={Nascimento AAD, Wang H, Papachristodoulou A & Margellos K},
  year = "2025"
}

@misc{efficientquanti-2025/11,
  title={Efficient Quantification of Time-Series Prediction Error: Optimal Selection Conformal Prediction},
  author={Pang B & Margellos K},
  year = "2025"
}

@misc{modelpredictive-2025/11,
  title={Model Predictive Control with Multiple Constraint Horizons},
  author={Nascimento AAD, Wang H, Papachristodoulou A & Margellos K},
  year = "2025"
}

@misc{onthedesignofra-2025/11,
  title={On the Design of Rational Polynomial State Feedback Controllers},
  author={Newton M, Xiong Z, Wang H & Papachristodoulou A},
  year = "2025"
}

BibTeX

@misc{krylovsubspacea-2025/11,
  title={Krylov subspace acceleration for first-order splitting methods in convex quadratic programming},
  author={Pereira GB & Goulart P},
  year = "2025"
}

BibTeX

@inproceedings{predictivecontr-2025/10,
  title={Predictive Control Barrier Functions: bridging model predictive control and control barrier functions},
  author={Huang J, Wang H, Margellos K & Goulart P},
  booktitle={23rd European Control Conference (ECC 2025)},
  pages={2623-2629},
  year = "2025"
}

BibTeX

@inproceedings{predictivecontr-2025/10,
  title={Predictive Control Barrier Functions: bridging model predictive control and control barrier functions},
  author={Huang J, Wang H, Margellos K & Goulart P},
  booktitle={23rd European Control Conference (ECC 2025)},
  pages={2623-2629},
  year = "2025"
}

BibTeX

@article{controlofmultia-2025/9,
  title={Control of multi-array cross-directional systems using the generalised singular value decomposition},
  author={Kempf I, Christian GB, Abbott M, Bobb L, Goulart PJ et al.},
  journal={Automatica},
  volume={179},
  pages={112431-112431},
  publisher={Elsevier},
  year = "2025"
}

BibTeX

@article{deeplearningada-2025/8,
  title={Deep learning adaptive model predictive control of fed-batch cultivations},
  author={Krausch N, Doff-Sotta M, Cannon M, Neubauer P & Bournazou MNC},
  journal={Computers and Chemical Engineering },
  volume={203},
  number={109344},
  publisher={Elsevier},
  year = "2025"
}

BibTeX

@misc{datadrivenperfo-2025/7,
  title={Data-Driven Performance Guarantees for Parametric Optimization Problems},
  author={Huang J, Goulart P & Margellos K},
  year = "2025"
}

BibTeX

@misc{manipulatingpla-2025/7,
  title={Manipulating plant oxygen sensing through NCO substitution reveals trade-offs between growth and flooding tolerance},
  author={Perri M, He Y, Chirinos X, Lavilla-Puerta M, Latter R et al.},
  year = "2025"
}

BibTeX

@misc{datadrivenperfo-2025/7,
  title={Data-Driven Performance Guarantees for Parametric Optimization Problems},
  author={Huang J, Goulart P & Margellos K},
  year = "2025"
}